Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
CIITAP33076 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
CIITAP33076 AC133561.4-201ENST00000566112 224 ntBASIC25.36■■□□□ 1.65
CIITAP33076 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.36■■□□□ 1.65
CIITAP33076 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CIITAP33076 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.36■■□□□ 1.65
CIITAP33076 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.35■■□□□ 1.65
CIITAP33076 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.35■■□□□ 1.65
CIITAP33076 AC024257.2-201ENST00000549699 147 ntBASIC25.35■■□□□ 1.65
CIITAP33076 AL499627.2-201ENST00000606283 725 ntBASIC25.35■■□□□ 1.65
CIITAP33076 AC011298.3-201ENST00000615796 283 ntBASIC25.35■■□□□ 1.65
CIITAP33076 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.35■■□□□ 1.65
CIITAP33076 ANOS2P-203ENST00000472227 1816 ntBASIC25.35■■□□□ 1.65
CIITAP33076 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CIITAP33076 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.35■■□□□ 1.65
CIITAP33076 AC092068.2-201ENST00000590491 1708 ntBASIC25.34■■□□□ 1.65
CIITAP33076 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CIITAP33076 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.34■■□□□ 1.65
CIITAP33076 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.34■■□□□ 1.65
CIITAP33076 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.34■■□□□ 1.65
CIITAP33076 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.34■■□□□ 1.65
CIITAP33076 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CIITAP33076 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.34■■□□□ 1.65
CIITAP33076 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.34■■□□□ 1.65
CIITAP33076 AC135279.3-201ENST00000610945 1311 ntBASIC25.34■■□□□ 1.65
CIITAP33076 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CIITAP33076 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.33■■□□□ 1.65
CIITAP33076 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CIITAP33076 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CIITAP33076 MIR638-201ENST00000385237 100 ntBASIC25.33■■□□□ 1.65
CIITAP33076 PBX2P1-201ENST00000493219 1291 ntBASIC25.33■■□□□ 1.65
CIITAP33076 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.33■■□□□ 1.65
CIITAP33076 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.33■■□□□ 1.65
CIITAP33076 pRNA.6-201ENST00000610482 90 ntBASIC25.33■■□□□ 1.65
CIITAP33076 pRNA.5-201ENST00000612139 90 ntBASIC25.33■■□□□ 1.65
CIITAP33076 pRNA.11-201ENST00000618423 90 ntBASIC25.33■■□□□ 1.65
CIITAP33076 pRNA.13-201ENST00000619112 90 ntBASIC25.33■■□□□ 1.65
CIITAP33076 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.33■■□□□ 1.65
CIITAP33076 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
CIITAP33076 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
CIITAP33076 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CIITAP33076 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.32■■□□□ 1.64
CIITAP33076 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.32■■□□□ 1.64
CIITAP33076 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.32■■□□□ 1.64
CIITAP33076 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
CIITAP33076 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.32■■□□□ 1.64
CIITAP33076 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CIITAP33076 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CIITAP33076 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CIITAP33076 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.31■■□□□ 1.64
CIITAP33076 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
CIITAP33076 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.31■■□□□ 1.64
CIITAP33076 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.31■■□□□ 1.64
CIITAP33076 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.31■■□□□ 1.64
CIITAP33076 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CIITAP33076 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.31■■□□□ 1.64
CIITAP33076 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CIITAP33076 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.31■■□□□ 1.64
CIITAP33076 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.31■■□□□ 1.64
CIITAP33076 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.31■■□□□ 1.64
CIITAP33076 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CIITAP33076 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.3■■□□□ 1.64
CIITAP33076 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CIITAP33076 AC136469.2-201ENST00000623944 1028 ntBASIC25.3■■□□□ 1.64
CIITAP33076 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.3■■□□□ 1.64
CIITAP33076 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CIITAP33076 AL353803.4-201ENST00000565882 1934 ntBASIC25.29■■□□□ 1.64
CIITAP33076 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.29■■□□□ 1.64
CIITAP33076 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
CIITAP33076 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.29■■□□□ 1.64
CIITAP33076 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.29■■□□□ 1.64
CIITAP33076 AL031432.3-201ENST00000607698 485 ntBASIC25.29■■□□□ 1.64
CIITAP33076 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.29■■□□□ 1.64
CIITAP33076 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
CIITAP33076 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CIITAP33076 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CIITAP33076 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
CIITAP33076 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
CIITAP33076 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CIITAP33076 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.28■■□□□ 1.64
CIITAP33076 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CIITAP33076 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.28■■□□□ 1.64
CIITAP33076 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CIITAP33076 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CIITAP33076 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms