Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH4O15457 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH4O15457 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.29■■□□□ 1.64
MSH4O15457 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.29■■□□□ 1.64
MSH4O15457 AC024257.2-201ENST00000549699 147 ntBASIC25.29■■□□□ 1.64
MSH4O15457 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
MSH4O15457 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
MSH4O15457 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH4O15457 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.29■■□□□ 1.64
MSH4O15457 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH4O15457 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH4O15457 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH4O15457 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH4O15457 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH4O15457 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
MSH4O15457 PBX2P1-201ENST00000493219 1291 ntBASIC25.28■■□□□ 1.64
MSH4O15457 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
MSH4O15457 DUX4L4-201ENST00000566884 1269 ntBASIC25.28■■□□□ 1.64
MSH4O15457 MIR3181-201ENST00000578512 73 ntBASIC25.28■■□□□ 1.64
MSH4O15457 AC106739.1-201ENST00000617035 715 ntBASIC25.28■■□□□ 1.64
MSH4O15457 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.28■■□□□ 1.64
MSH4O15457 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH4O15457 ANOS2P-203ENST00000472227 1816 ntBASIC25.28■■□□□ 1.64
MSH4O15457 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
MSH4O15457 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH4O15457 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH4O15457 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.27■■□□□ 1.64
MSH4O15457 LINC01529-204ENST00000636474 1715 ntBASIC25.27■■□□□ 1.64
MSH4O15457 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC25.27■■□□□ 1.64
MSH4O15457 MIR638-201ENST00000385237 100 ntBASIC25.27■■□□□ 1.64
MSH4O15457 AC135279.3-201ENST00000610945 1311 ntBASIC25.27■■□□□ 1.64
MSH4O15457 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC25.27■■□□□ 1.64
MSH4O15457 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.27■■□□□ 1.64
MSH4O15457 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.27■■□□□ 1.64
MSH4O15457 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH4O15457 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH4O15457 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH4O15457 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH4O15457 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH4O15457 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.26■■□□□ 1.63
MSH4O15457 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.26■■□□□ 1.63
MSH4O15457 pRNA.6-201ENST00000610482 90 ntBASIC25.26■■□□□ 1.63
MSH4O15457 pRNA.5-201ENST00000612139 90 ntBASIC25.26■■□□□ 1.63
MSH4O15457 pRNA.11-201ENST00000618423 90 ntBASIC25.26■■□□□ 1.63
MSH4O15457 pRNA.13-201ENST00000619112 90 ntBASIC25.26■■□□□ 1.63
MSH4O15457 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.26■■□□□ 1.63
MSH4O15457 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.26■■□□□ 1.63
MSH4O15457 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MSH4O15457 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MSH4O15457 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH4O15457 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH4O15457 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.25■■□□□ 1.63
MSH4O15457 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC25.25■■□□□ 1.63
MSH4O15457 AL138724.1-201ENST00000606771 1088 ntBASIC25.25■■□□□ 1.63
MSH4O15457 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.25■■□□□ 1.63
MSH4O15457 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH4O15457 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH4O15457 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH4O15457 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH4O15457 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
MSH4O15457 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH4O15457 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH4O15457 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH4O15457 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.24■■□□□ 1.63
MSH4O15457 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH4O15457 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH4O15457 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH4O15457 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH4O15457 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH4O15457 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
MSH4O15457 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
MSH4O15457 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH4O15457 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.23■■□□□ 1.63
MSH4O15457 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH4O15457 AL353803.4-201ENST00000565882 1934 ntBASIC25.23■■□□□ 1.63
MSH4O15457 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
MSH4O15457 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH4O15457 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.22■■□□□ 1.63
MSH4O15457 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.22■■□□□ 1.63
MSH4O15457 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.22■■□□□ 1.63
MSH4O15457 AC011298.3-201ENST00000615796 283 ntBASIC25.22■■□□□ 1.63
MSH4O15457 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.22■■□□□ 1.63
MSH4O15457 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.22■■□□□ 1.63
MSH4O15457 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.22■■□□□ 1.63
MSH4O15457 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
MSH4O15457 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.22■■□□□ 1.63
MSH4O15457 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
MSH4O15457 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
MSH4O15457 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH4O15457 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH4O15457 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.21■■□□□ 1.63
MSH4O15457 AC092068.2-201ENST00000590491 1708 ntBASIC25.21■■□□□ 1.63
MSH4O15457 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.21■■□□□ 1.63
MSH4O15457 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
MSH4O15457 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.21■■□□□ 1.63
MSH4O15457 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.21■■□□□ 1.63
MSH4O15457 AC133561.4-201ENST00000566112 224 ntBASIC25.21■■□□□ 1.63
MSH4O15457 AL499627.2-201ENST00000606283 725 ntBASIC25.21■■□□□ 1.63
MSH4O15457 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.21■■□□□ 1.63
MSH4O15457 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms