Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SLC28A1O00337 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.56■■□□□ 1.04
SLC28A1O00337 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC28A1O00337 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.56■■□□□ 1.04
SLC28A1O00337 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SLC28A1O00337 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC28A1O00337 ESRRAP2-201ENST00000418437 1549 ntBASIC21.55■■□□□ 1.04
SLC28A1O00337 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC28A1O00337 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC28A1O00337 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC28A1O00337 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC28A1O00337 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.55■■□□□ 1.04
SLC28A1O00337 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.55■■□□□ 1.04
SLC28A1O00337 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.55■■□□□ 1.04
SLC28A1O00337 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SLC28A1O00337 AL353803.4-201ENST00000565882 1934 ntBASIC21.55■■□□□ 1.04
SLC28A1O00337 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SLC28A1O00337 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SLC28A1O00337 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC28A1O00337 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.54■■□□□ 1.04
SLC28A1O00337 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SLC28A1O00337 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
SLC28A1O00337 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.54■■□□□ 1.04
SLC28A1O00337 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC28A1O00337 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SLC28A1O00337 GUSBP5-202ENST00000510805 1989 ntBASIC21.54■■□□□ 1.04
SLC28A1O00337 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.53■■□□□ 1.04
SLC28A1O00337 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.53■■□□□ 1.04
SLC28A1O00337 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.53■■□□□ 1.04
SLC28A1O00337 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.53■■□□□ 1.04
SLC28A1O00337 AL031848.2-201ENST00000607670 837 ntBASIC21.53■■□□□ 1.04
SLC28A1O00337 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.53■■□□□ 1.04
SLC28A1O00337 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
SLC28A1O00337 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SLC28A1O00337 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.52■■□□□ 1.04
SLC28A1O00337 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.52■■□□□ 1.04
SLC28A1O00337 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SLC28A1O00337 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SLC28A1O00337 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.52■■□□□ 1.04
SLC28A1O00337 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.52■■□□□ 1.04
SLC28A1O00337 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.52■■□□□ 1.04
SLC28A1O00337 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SLC28A1O00337 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SLC28A1O00337 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC28A1O00337 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SLC28A1O00337 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC28A1O00337 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC28A1O00337 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SLC28A1O00337 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.51■■□□□ 1.03
SLC28A1O00337 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.51■■□□□ 1.03
SLC28A1O00337 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SLC28A1O00337 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.51■■□□□ 1.03
SLC28A1O00337 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.51■■□□□ 1.03
SLC28A1O00337 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC28A1O00337 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.5■■□□□ 1.03
SLC28A1O00337 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SLC28A1O00337 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SLC28A1O00337 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.49■■□□□ 1.03
SLC28A1O00337 ECEL1P1-201ENST00000373592 1742 ntBASIC21.49■■□□□ 1.03
SLC28A1O00337 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SLC28A1O00337 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC28A1O00337 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC28A1O00337 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC28A1O00337 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.49■■□□□ 1.03
SLC28A1O00337 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 AC144652.1-201ENST00000609974 1624 ntBASIC21.49■■□□□ 1.03
SLC28A1O00337 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
SLC28A1O00337 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SLC28A1O00337 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SLC28A1O00337 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
SLC28A1O00337 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.48■■□□□ 1.03
SLC28A1O00337 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.48■■□□□ 1.03
SLC28A1O00337 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
SLC28A1O00337 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SLC28A1O00337 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.48■■□□□ 1.03
SLC28A1O00337 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.48■■□□□ 1.03
SLC28A1O00337 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.48■■□□□ 1.03
SLC28A1O00337 MIR6722-201ENST00000617286 78 ntBASIC21.48■■□□□ 1.03
SLC28A1O00337 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.48■■□□□ 1.03
SLC28A1O00337 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
SLC28A1O00337 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SLC28A1O00337 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SLC28A1O00337 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms