Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.93■■□□□ 1.9
COL28A1Q2UY09 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL28A1Q2UY09 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL28A1Q2UY09 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC26.9■■□□□ 1.9
COL28A1Q2UY09 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
COL28A1Q2UY09 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL28A1Q2UY09 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL28A1Q2UY09 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL28A1Q2UY09 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL28A1Q2UY09 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
COL28A1Q2UY09 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL28A1Q2UY09 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.85■■□□□ 1.89
COL28A1Q2UY09 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.85■■□□□ 1.89
COL28A1Q2UY09 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL28A1Q2UY09 AL391121.1-201ENST00000607967 1349 ntBASIC26.84■■□□□ 1.89
COL28A1Q2UY09 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
COL28A1Q2UY09 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
COL28A1Q2UY09 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.79■■□□□ 1.88
COL28A1Q2UY09 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
COL28A1Q2UY09 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL28A1Q2UY09 MIR3665-201ENST00000578708 105 ntBASIC26.78■■□□□ 1.88
COL28A1Q2UY09 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
COL28A1Q2UY09 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL28A1Q2UY09 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.77■■□□□ 1.88
COL28A1Q2UY09 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL28A1Q2UY09 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.77■■□□□ 1.88
COL28A1Q2UY09 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.75■■□□□ 1.87
COL28A1Q2UY09 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.75■■□□□ 1.87
COL28A1Q2UY09 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
COL28A1Q2UY09 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL28A1Q2UY09 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.71■■□□□ 1.87
COL28A1Q2UY09 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.71■■□□□ 1.87
COL28A1Q2UY09 AC087741.3-201ENST00000624270 1347 ntBASIC26.69■■□□□ 1.86
COL28A1Q2UY09 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
COL28A1Q2UY09 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
COL28A1Q2UY09 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.67■■□□□ 1.86
COL28A1Q2UY09 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.66■■□□□ 1.86
COL28A1Q2UY09 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL28A1Q2UY09 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.64■■□□□ 1.86
COL28A1Q2UY09 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.64■■□□□ 1.86
COL28A1Q2UY09 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.64■■□□□ 1.86
COL28A1Q2UY09 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
COL28A1Q2UY09 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.63■■□□□ 1.85
COL28A1Q2UY09 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
COL28A1Q2UY09 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
COL28A1Q2UY09 AC044849.2-201ENST00000606596 710 ntBASIC26.6■■□□□ 1.85
COL28A1Q2UY09 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.85
COL28A1Q2UY09 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.58■■□□□ 1.85
COL28A1Q2UY09 DUX4L28-201ENST00000623687 678 ntBASIC26.57■■□□□ 1.84
COL28A1Q2UY09 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
COL28A1Q2UY09 EBPL-202ENST00000378268 680 ntTSL 3 BASIC26.55■■□□□ 1.84
COL28A1Q2UY09 ZNRF2P2-203ENST00000454624 420 ntBASIC26.53■■□□□ 1.84
COL28A1Q2UY09 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
COL28A1Q2UY09 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.52■■□□□ 1.84
COL28A1Q2UY09 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.51■■□□□ 1.83
COL28A1Q2UY09 AL133380.1-201ENST00000506013 324 ntBASIC26.5■■□□□ 1.83
COL28A1Q2UY09 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
COL28A1Q2UY09 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.49■■□□□ 1.83
COL28A1Q2UY09 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.49■■□□□ 1.83
COL28A1Q2UY09 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
COL28A1Q2UY09 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
COL28A1Q2UY09 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
COL28A1Q2UY09 AC145285.7-201ENST00000614819 1539 ntBASIC26.47■■□□□ 1.83
COL28A1Q2UY09 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
COL28A1Q2UY09 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL28A1Q2UY09 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
COL28A1Q2UY09 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.45■■□□□ 1.82
COL28A1Q2UY09 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
COL28A1Q2UY09 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL28A1Q2UY09 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
COL28A1Q2UY09 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL28A1Q2UY09 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
COL28A1Q2UY09 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.4■■□□□ 1.82
COL28A1Q2UY09 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC26.39■■□□□ 1.82
COL28A1Q2UY09 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.39■■□□□ 1.82
COL28A1Q2UY09 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.39■■□□□ 1.82
COL28A1Q2UY09 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
COL28A1Q2UY09 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
COL28A1Q2UY09 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.36■■□□□ 1.81
COL28A1Q2UY09 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
COL28A1Q2UY09 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
COL28A1Q2UY09 AC005559.1-201ENST00000589661 871 ntBASIC26.35■■□□□ 1.81
COL28A1Q2UY09 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL28A1Q2UY09 MIR762-201ENST00000390236 83 ntBASIC26.34■■□□□ 1.81
COL28A1Q2UY09 MIR4449-201ENST00000578365 66 ntBASIC26.34■■□□□ 1.81
COL28A1Q2UY09 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL28A1Q2UY09 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.32■■□□□ 1.8
COL28A1Q2UY09 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.31■■□□□ 1.8
COL28A1Q2UY09 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.3■■□□□ 1.8
COL28A1Q2UY09 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL28A1Q2UY09 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
COL28A1Q2UY09 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL28A1Q2UY09 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
COL28A1Q2UY09 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
COL28A1Q2UY09 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.24■■□□□ 1.79
COL28A1Q2UY09 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.23■■□□□ 1.79
COL28A1Q2UY09 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL28A1Q2UY09 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL28A1Q2UY09 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL28A1Q2UY09 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms