Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.53□□□□□ -0.4
CLRN1P58418 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
CLRN1P58418 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 ZNF283-209ENST00000618787 5713 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
CLRN1P58418 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CLRN1P58418 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CLRN1P58418 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.52□□□□□ -0.4
CLRN1P58418 AC008620.2-201ENST00000510294 1569 ntBASIC12.52□□□□□ -0.4
CLRN1P58418 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC12.52□□□□□ -0.4
CLRN1P58418 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CLRN1P58418 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CLRN1P58418 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 OR8T1P-201ENST00000421347 918 ntBASIC12.52□□□□□ -0.41
CLRN1P58418 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.52□□□□□ -0.41
CLRN1P58418 AC092658.1-201ENST00000505836 891 ntBASIC12.52□□□□□ -0.41
CLRN1P58418 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC12.52□□□□□ -0.41
CLRN1P58418 JPT2-214ENST00000569765 782 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.52□□□□□ -0.41
CLRN1P58418 AL645939.5-201ENST00000606834 243 ntBASIC12.52□□□□□ -0.41
CLRN1P58418 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC12.52□□□□□ -0.41
CLRN1P58418 AC244452.3-201ENST00000636814 210 ntBASIC12.52□□□□□ -0.41
CLRN1P58418 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.52□□□□□ -0.41
CLRN1P58418 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CLRN1P58418 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC12.52□□□□□ -0.41
CLRN1P58418 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CLRN1P58418 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CLRN1P58418 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 SALL4P6-201ENST00000429385 1691 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 AC015909.3-201ENST00000572855 1794 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 KRT17P5-201ENST00000332088 839 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 MBP-201ENST00000354542 575 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms