Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC10.63□□□□□ -0.71
HLA-DRB4X5D2U9 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC007952.5-201ENST00000572818 1486 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC024075.2-201ENST00000598112 1473 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AL590824.1-201ENST00000403828 1349 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 TP73-201ENST00000346387 4854 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AP002353.1-201ENST00000528257 1599 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CSH2-202ENST00000345366 598 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 JTB-202ENST00000356648 1040 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 NPPA-201ENST00000376476 728 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC103592.1-201ENST00000394513 664 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 HNRNPA1P32-201ENST00000396326 963 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 MIR1908-201ENST00000410394 80 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC092580.1-201ENST00000433998 658 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC004898.1-201ENST00000451057 766 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC104073.2-201ENST00000453737 312 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 MARK2P5-201ENST00000507649 634 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CCNC-217ENST00000523985 958 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CSH2-206ENST00000560142 749 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 RN7SL219P-201ENST00000582872 296 ntBASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HLA-DRB4X5D2U9 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 RAN-210ENST00000541630 1475 ntTSL 2 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
HLA-DRB4X5D2U9 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms