Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.54□□□□□ -0.24
FOXA1P55317 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 HNRNPA1P2-207ENST00000432375 960 ntBASIC13.54□□□□□ -0.24
FOXA1P55317 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA1P55317 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA1P55317 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA1P55317 RNA5SP412-201ENST00000516234 123 ntBASIC13.54□□□□□ -0.24
FOXA1P55317 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA1P55317 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA1P55317 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.54□□□□□ -0.24
FOXA1P55317 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 AC015967.2-201ENST00000624092 234 ntBASIC13.54□□□□□ -0.24
FOXA1P55317 AC006435.4-201ENST00000625037 234 ntBASIC13.54□□□□□ -0.24
FOXA1P55317 AL356737.1-201ENST00000634391 234 ntBASIC13.54□□□□□ -0.24
FOXA1P55317 EGLN3-205ENST00000547327 2849 ntBASIC13.54□□□□□ -0.24
FOXA1P55317 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
FOXA1P55317 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA1P55317 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
FOXA1P55317 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 CICP1-201ENST00000416803 2410 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 PXK-210ENST00000479241 2817 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 RNA5SP359-201ENST00000364838 113 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA1P55317 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 AC005034.1-201ENST00000426657 489 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 AL591846.1-201ENST00000451736 433 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 GPR53P-205ENST00000457298 1084 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.53□□□□□ -0.24
FOXA1P55317 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA1P55317 AC116345.2-201ENST00000512837 523 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 AC104982.3-201ENST00000581995 514 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA1P55317 AL132994.2-201ENST00000603120 687 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
FOXA1P55317 AL035252.4-201ENST00000624174 288 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA1P55317 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA1P55317 AL645937.6-201ENST00000641122 3727 ntBASIC13.53□□□□□ -0.24
FOXA1P55317 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms