Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
TPM1P09493 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
TPM1P09493 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 FAM197Y7-201ENST00000432892 766 ntBASIC15.5■□□□□ 0.07
TPM1P09493 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.5■□□□□ 0.07
TPM1P09493 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.5■□□□□ 0.07
TPM1P09493 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.5■□□□□ 0.07
TPM1P09493 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.5■□□□□ 0.07
TPM1P09493 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 AC132192.2-201ENST00000596206 1147 ntBASIC15.5■□□□□ 0.07
TPM1P09493 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 MIR6720-201ENST00000611664 98 ntBASIC15.5■□□□□ 0.07
TPM1P09493 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 AC108024.1-201ENST00000626286 1721 ntBASIC15.5■□□□□ 0.07
TPM1P09493 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 USP39-220ENST00000613444 2161 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TPM1P09493 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM1P09493 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 LRRC15-201ENST00000347624 5883 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM1P09493 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.49■□□□□ 0.07
TPM1P09493 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.49■□□□□ 0.07
TPM1P09493 TP53TG3HP-202ENST00000569755 579 ntBASIC15.49■□□□□ 0.07
TPM1P09493 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.49■□□□□ 0.07
TPM1P09493 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 FBN3-201ENST00000270509 9232 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 PPP1R26P2-201ENST00000611403 3595 ntBASIC15.49■□□□□ 0.07
TPM1P09493 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 CACNA1C-209ENST00000399603 7377 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TPM1P09493 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM1P09493 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM1P09493 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
TPM1P09493 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC15.48■□□□□ 0.07
TPM1P09493 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
TPM1P09493 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms