Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 RN7SL818P-201ENST00000485099 259 ntBASIC12.88□□□□□ -0.35
LRFN1Q9P244 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 RN7SL725P-201ENST00000606439 259 ntBASIC12.88□□□□□ -0.35
LRFN1Q9P244 HPX-213ENST00000615166 826 ntTSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 AL132780.4-201ENST00000624870 1135 ntBASIC12.88□□□□□ -0.35
LRFN1Q9P244 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 ODCP-201ENST00000459650 1639 ntBASIC12.88□□□□□ -0.35
LRFN1Q9P244 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 PHB-210ENST00000511832 1509 ntTSL 2 BASIC12.88□□□□□ -0.35
LRFN1Q9P244 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LRFN1Q9P244 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC068760.1-201ENST00000493579 1953 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC019109.1-201ENST00000401725 1874 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC114501.1-201ENST00000445949 172 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 PIN4P1-201ENST00000451079 396 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 CTBP2P4-201ENST00000513884 920 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC009084.3-201ENST00000623356 437 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 ST5-261ENST00000626808 1071 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 HLA-C-210ENST00000640219 976 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 AC138761.6-201ENST00000583997 1423 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.87□□□□□ -0.35
LRFN1Q9P244 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LRFN1Q9P244 PDXDC2P-206ENST00000534700 1315 ntBASIC12.87□□□□□ -0.35
LRFN1Q9P244 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
LRFN1Q9P244 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms