Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC12.57□□□□□ -0.4
CLRN1P58418 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CLRN1P58418 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
CLRN1P58418 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 LINC01165-201ENST00000445190 1623 ntBASIC12.56□□□□□ -0.4
CLRN1P58418 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 AGER-203ENST00000375065 665 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 AL391647.1-201ENST00000395664 511 ntBASIC12.56□□□□□ -0.4
CLRN1P58418 AC006987.1-201ENST00000413610 527 ntBASIC12.56□□□□□ -0.4
CLRN1P58418 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC12.56□□□□□ -0.4
CLRN1P58418 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.56□□□□□ -0.4
CLRN1P58418 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC12.56□□□□□ -0.4
CLRN1P58418 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.56□□□□□ -0.4
CLRN1P58418 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 AC020914.3-201ENST00000594712 304 ntBASIC12.56□□□□□ -0.4
CLRN1P58418 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 MAPK10-262ENST00000641051 5738 ntBASIC12.56□□□□□ -0.4
CLRN1P58418 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.56□□□□□ -0.4
CLRN1P58418 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.56□□□□□ -0.4
CLRN1P58418 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 FRMPD2B-201ENST00000431305 1347 ntBASIC12.56□□□□□ -0.4
CLRN1P58418 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC12.56□□□□□ -0.4
CLRN1P58418 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CLRN1P58418 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 AL157791.1-201ENST00000553667 1699 ntBASIC12.55□□□□□ -0.4
CLRN1P58418 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 MARK2P9-201ENST00000430958 1727 ntBASIC12.55□□□□□ -0.4
CLRN1P58418 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
CLRN1P58418 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
CLRN1P58418 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.55□□□□□ -0.4
CLRN1P58418 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC12.55□□□□□ -0.4
CLRN1P58418 AC091804.1-201ENST00000486888 567 ntBASIC12.55□□□□□ -0.4
CLRN1P58418 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
CLRN1P58418 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC12.55□□□□□ -0.4
CLRN1P58418 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 AC091544.8-201ENST00000619490 361 ntBASIC12.55□□□□□ -0.4
CLRN1P58418 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
CLRN1P58418 C8orf49-201ENST00000525043 1968 ntBASIC12.55□□□□□ -0.4
CLRN1P58418 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 AC009474.1-201ENST00000455096 1565 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms