Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
FOXA1P55317 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 BTBD6P1-201ENST00000412176 1267 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 OR8T1P-201ENST00000421347 918 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 FAM21FP-201ENST00000426241 1131 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 TSPY25P-201ENST00000429463 745 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.56□□□□□ -0.24
FOXA1P55317 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.56□□□□□ -0.24
FOXA1P55317 AC007663.3-201ENST00000609632 465 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 AC005695.3-201ENST00000614522 232 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
FOXA1P55317 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.56□□□□□ -0.24
FOXA1P55317 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
FOXA1P55317 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
FOXA1P55317 AC020763.3-201ENST00000625095 2904 ntBASIC13.56□□□□□ -0.24
FOXA1P55317 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
FOXA1P55317 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.56□□□□□ -0.24
FOXA1P55317 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 PCDHA5-203ENST00000614258 4248 ntBASIC13.55□□□□□ -0.24
FOXA1P55317 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
FOXA1P55317 DPM3-202ENST00000368399 517 ntBASIC13.55□□□□□ -0.24
FOXA1P55317 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.55□□□□□ -0.24
FOXA1P55317 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
FOXA1P55317 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.55□□□□□ -0.24
FOXA1P55317 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 AC005740.1-201ENST00000515639 522 ntBASIC13.55□□□□□ -0.24
FOXA1P55317 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 RN7SL163P-201ENST00000583100 276 ntBASIC13.55□□□□□ -0.24
FOXA1P55317 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC13.55□□□□□ -0.24
FOXA1P55317 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.55□□□□□ -0.24
FOXA1P55317 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
FOXA1P55317 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA1P55317 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.54□□□□□ -0.24
FOXA1P55317 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
FOXA1P55317 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms