Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 MANEA-AS1-201ENST00000564541 2268 ntBASIC13.88□□□□□ -0.19
COL6A2P12110 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A2P12110 AL445209.1-201ENST00000607269 3491 ntBASIC13.88□□□□□ -0.19
COL6A2P12110 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
COL6A2P12110 YBX1P6-201ENST00000442962 1002 ntBASIC13.88□□□□□ -0.19
COL6A2P12110 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A2P12110 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A2P12110 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A2P12110 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL6A2P12110 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.88□□□□□ -0.19
COL6A2P12110 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A2P12110 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC13.88□□□□□ -0.19
COL6A2P12110 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL6A2P12110 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL6A2P12110 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A2P12110 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A2P12110 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A2P12110 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A2P12110 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.87□□□□□ -0.19
COL6A2P12110 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A2P12110 AC104989.1-201ENST00000519711 778 ntBASIC13.87□□□□□ -0.19
COL6A2P12110 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.87□□□□□ -0.19
COL6A2P12110 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.87□□□□□ -0.19
COL6A2P12110 BNIP3P13-201ENST00000599968 566 ntBASIC13.87□□□□□ -0.19
COL6A2P12110 AL512343.1-201ENST00000605837 169 ntBASIC13.87□□□□□ -0.19
COL6A2P12110 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
COL6A2P12110 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.87□□□□□ -0.19
COL6A2P12110 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
COL6A2P12110 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL6A2P12110 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL6A2P12110 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
COL6A2P12110 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.86□□□□□ -0.19
COL6A2P12110 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A2P12110 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL6A2P12110 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.86□□□□□ -0.19
COL6A2P12110 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.86□□□□□ -0.19
COL6A2P12110 CSF2RBP1-201ENST00000447905 391 ntBASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms