Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 KRT8P24-201ENST00000560290 1559 ntBASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 TEKT4P2-202ENST00000559466 1312 ntBASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 MST1P2-201ENST00000457982 2291 ntBASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 RN7SL665P-201ENST00000578793 300 ntBASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
TRIM39Q9HCM9 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.96□□□□□ -0.18
TRIM39Q9HCM9 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC026316.1-201ENST00000398900 414 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms