Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 AC115284.2-201ENST00000624646 2054 ntBASIC12.42□□□□□ -0.42
SOX2P48431 POM121L14P-201ENST00000406100 1558 ntBASIC12.42□□□□□ -0.42
SOX2P48431 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 AC024075.2-201ENST00000598112 1473 ntBASIC12.41□□□□□ -0.42
SOX2P48431 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 OPRK1-201ENST00000265572 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 MIR1202-201ENST00000408529 83 ntBASIC12.41□□□□□ -0.42
SOX2P48431 AP006294.1-201ENST00000415407 339 ntBASIC12.41□□□□□ -0.42
SOX2P48431 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.41□□□□□ -0.42
SOX2P48431 OS9-206ENST00000435406 2346 ntTSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC12.41□□□□□ -0.42
SOX2P48431 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.41□□□□□ -0.42
SOX2P48431 KRT18P15-201ENST00000458108 1291 ntBASIC12.41□□□□□ -0.42
SOX2P48431 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 SLC25A47P1-201ENST00000531577 414 ntBASIC12.41□□□□□ -0.42
SOX2P48431 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.41□□□□□ -0.42
SOX2P48431 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC12.41□□□□□ -0.42
SOX2P48431 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC12.41□□□□□ -0.42
SOX2P48431 PAM16-211ENST00000575848 518 ntTSL 3 BASIC12.41□□□□□ -0.42
SOX2P48431 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.41□□□□□ -0.42
SOX2P48431 MIR6720-201ENST00000611664 98 ntBASIC12.41□□□□□ -0.42
SOX2P48431 ZACNP1-201ENST00000612259 710 ntBASIC12.41□□□□□ -0.42
SOX2P48431 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
SOX2P48431 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC12.41□□□□□ -0.42
SOX2P48431 MAPK10-262ENST00000641051 5738 ntBASIC12.41□□□□□ -0.42
SOX2P48431 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
SOX2P48431 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC12.41□□□□□ -0.42
SOX2P48431 ENOX2-204ENST00000394363 4174 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
SOX2P48431 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
SOX2P48431 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 TNFRSF8-203ENST00000417814 3593 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
SOX2P48431 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.4□□□□□ -0.42
SOX2P48431 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC12.4□□□□□ -0.42
SOX2P48431 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
SOX2P48431 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
SOX2P48431 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
SOX2P48431 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms