Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AL591122.2-201ENST00000624125 1853 ntBASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 RN7SL455P-201ENST00000580629 282 ntBASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AL606495.2-201ENST00000605867 535 ntBASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AC103810.10-201ENST00000606504 343 ntBASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 AL157996.1-201ENST00000624684 2299 ntBASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
TRIM39Q9HCM9 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AC027612.1-201ENST00000445234 2395 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AL139158.3-201ENST00000641212 1562 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 RPL18AP8-201ENST00000486071 528 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AC019193.1-201ENST00000506678 823 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AC051619.9-201ENST00000623237 597 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 AL353726.2-201ENST00000623259 884 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 LINC02486-201ENST00000604157 3000 ntBASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
TRIM39Q9HCM9 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms