Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 RN7SL148P-201ENST00000467120 279 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 FP325317.1-201ENST00000539936 1042 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 AC245369.8-201ENST00000636589 306 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 TMEM256P1-201ENST00000430550 340 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 AC104521.1-201ENST00000598582 279 ntTSL 5 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 CDC20P1-201ENST00000488829 1500 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 DNAJB8-202ENST00000469083 3365 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 SNORA30.1-201ENST00000363193 129 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 CD37-203ENST00000426897 1204 ntTSL 2 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 Metazoa_SRP.168-201ENST00000621608 264 ntBASIC13.36□□□□□ -0.27
VPS13AQ96RL7 LINC00963-217ENST00000624009 663 ntTSL 5 BASIC13.36□□□□□ -0.27
VPS13AQ96RL7 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 BX640514.1-201ENST00000583223 1918 ntBASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 OAZ3-202ENST00000400999 890 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 RNA5SP407-201ENST00000410275 110 ntBASIC13.35□□□□□ -0.27
VPS13AQ96RL7 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PGAP2-219ENST00000479072 894 ntTSL 3 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 MOG-229ENST00000483013 279 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 MOG-232ENST00000490427 327 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PSMG3-AS1-207ENST00000612019 586 ntTSL 4 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 BIN3-212ENST00000640731 450 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
VPS13AQ96RL7 RN7SL646P-201ENST00000492969 297 ntBASIC13.35□□□□□ -0.27
VPS13AQ96RL7 MIR2277-201ENST00000515916 93 ntBASIC13.35□□□□□ -0.27
VPS13AQ96RL7 IGHV3OR16-11-201ENST00000565524 349 ntBASIC13.35□□□□□ -0.27
VPS13AQ96RL7 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC13.35□□□□□ -0.27
VPS13AQ96RL7 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms