Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SHROOM1Q2M3G4 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SHROOM1Q2M3G4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 AC106827.1-201ENST00000366454 431 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 AC092810.2-201ENST00000431570 362 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 RN7SL128P-201ENST00000467883 305 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 FAM86KP-201ENST00000509817 987 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 SEPHS2P1-201ENST00000511618 1162 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 HNRNPA1P5-201ENST00000558213 966 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 AL139424.3-202ENST00000641619 917 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SHROOM1Q2M3G4 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 RCC2P5-201ENST00000492126 1487 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 PIFO-201ENST00000369737 746 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 PGAM1P11-201ENST00000416729 680 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 OR51A9P-201ENST00000422578 911 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AL929302.1-201ENST00000426556 871 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 FAU-202ENST00000434372 533 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AC025594.1-201ENST00000469533 543 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 RBM4-207ENST00000506523 654 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AP005212.2-201ENST00000584979 510 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AC010531.8-201ENST00000623341 685 ntBASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SHROOM1Q2M3G4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SHROOM1Q2M3G4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHROOM1Q2M3G4 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms