Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.77□□□□□ -0.05
APOEP02649 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
APOEP02649 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
APOEP02649 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
APOEP02649 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
APOEP02649 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
APOEP02649 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.77□□□□□ -0.05
APOEP02649 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.77□□□□□ -0.05
APOEP02649 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
APOEP02649 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 AGAP10P-201ENST00000454844 2418 ntBASIC14.76□□□□□ -0.05
APOEP02649 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 AL583805.1-201ENST00000391389 531 ntBASIC14.76□□□□□ -0.05
APOEP02649 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 AC006987.1-201ENST00000413610 527 ntBASIC14.76□□□□□ -0.05
APOEP02649 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.76□□□□□ -0.05
APOEP02649 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.76□□□□□ -0.05
APOEP02649 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 RN7SL769P-201ENST00000469386 295 ntBASIC14.76□□□□□ -0.05
APOEP02649 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 RN7SL67P-201ENST00000492147 296 ntBASIC14.76□□□□□ -0.05
APOEP02649 AC114947.1-202ENST00000514136 344 ntBASIC14.76□□□□□ -0.05
APOEP02649 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.76□□□□□ -0.05
APOEP02649 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.76□□□□□ -0.05
APOEP02649 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.76□□□□□ -0.05
APOEP02649 AC006453.1-201ENST00000636037 1257 ntBASIC14.76□□□□□ -0.05
APOEP02649 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
APOEP02649 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.76□□□□□ -0.05
APOEP02649 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.76□□□□□ -0.05
APOEP02649 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
APOEP02649 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
APOEP02649 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
APOEP02649 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
APOEP02649 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.75□□□□□ -0.05
APOEP02649 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
APOEP02649 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 SHMT1P1-201ENST00000419974 1312 ntBASIC14.75□□□□□ -0.05
APOEP02649 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.75□□□□□ -0.05
APOEP02649 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.75□□□□□ -0.05
APOEP02649 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.75□□□□□ -0.05
APOEP02649 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.75□□□□□ -0.05
APOEP02649 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.75□□□□□ -0.05
APOEP02649 AC073869.2-201ENST00000417338 1026 ntBASIC14.75□□□□□ -0.05
APOEP02649 RPL8P2-201ENST00000430538 502 ntBASIC14.75□□□□□ -0.05
APOEP02649 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.75□□□□□ -0.05
APOEP02649 DUTP3-201ENST00000450025 415 ntBASIC14.75□□□□□ -0.05
APOEP02649 AP000358.1-201ENST00000456260 156 ntBASIC14.75□□□□□ -0.05
APOEP02649 GOLGA2P8-201ENST00000505201 779 ntBASIC14.75□□□□□ -0.05
APOEP02649 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.75□□□□□ -0.05
APOEP02649 IGLV3-15-201ENST00000518356 244 ntBASIC14.75□□□□□ -0.05
APOEP02649 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
APOEP02649 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.75□□□□□ -0.05
APOEP02649 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.75□□□□□ -0.05
APOEP02649 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.75□□□□□ -0.05
APOEP02649 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.75□□□□□ -0.05
APOEP02649 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms