Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 E2F3P2-201ENST00000447755 1422 ntBASIC12.88□□□□□ -0.35
USB1Q9BQ65 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 LINC00888-202ENST00000471496 1490 ntTSL 3 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AL136172.1-201ENST00000598590 1394 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 MGST3-204ENST00000367888 778 ntTSL 3 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 GCNT6-201ENST00000379591 934 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 RNMTL1P1-201ENST00000454103 560 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 RNU6-467P-201ENST00000517027 110 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 RN7SKP64-201ENST00000517206 328 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC022217.1-201ENST00000521069 738 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 RERG-205ENST00000537647 935 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 LINC00648-204ENST00000557749 443 ntTSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC104072.1-201ENST00000568817 668 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 MIR3619-201ENST00000579667 83 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC025165.5-201ENST00000602802 578 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC018754.1-201ENST00000607486 925 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC069503.1-202ENST00000616576 642 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC091544.8-201ENST00000619490 361 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 AP000484.1-201ENST00000620067 1252 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 CU638689.4-208ENST00000623324 936 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC073578.4-201ENST00000623945 514 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 CU634019.6-203ENST00000624728 936 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 NAP1L6-202ENST00000641404 1222 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
USB1Q9BQ65 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 AL928921.2-201ENST00000641325 2442 ntBASIC12.87□□□□□ -0.35
USB1Q9BQ65 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
USB1Q9BQ65 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 AC244394.1-201ENST00000435000 1665 ntBASIC12.86□□□□□ -0.35
USB1Q9BQ65 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 RN7SKP214-201ENST00000364208 315 ntBASIC12.86□□□□□ -0.35
USB1Q9BQ65 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
USB1Q9BQ65 CRCP-204ENST00000398684 492 ntTSL 2 BASIC12.86□□□□□ -0.35
USB1Q9BQ65 OR51A6P-201ENST00000418680 1004 ntBASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms