Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 TUBB2BP1-201ENST00000404155 871 ntBASIC15.17■□□□□ 0.02
LRCH3Q96II8 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 LINP1-201ENST00000417112 917 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 AC000078.1-201ENST00000420617 682 ntBASIC15.17■□□□□ 0.02
LRCH3Q96II8 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 RAB30-AS1-205ENST00000530270 1116 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 PDXDC2P-206ENST00000534700 1315 ntBASIC15.17■□□□□ 0.02
LRCH3Q96II8 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 LRRIQ3-203ENST00000370911 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AL590440.2-201ENST00000641973 1595 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 U3.41-201ENST00000408711 219 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC092573.1-201ENST00000433054 884 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 CA5BP1-205ENST00000435806 1064 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 AL450346.2-201ENST00000495602 1024 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 TSPAN5-202ENST00000505184 1191 ntTSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AL359219.1-201ENST00000556311 934 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 KRT8P34-201ENST00000577607 1044 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 MIR4265-201ENST00000582152 99 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC091691.1-201ENST00000583587 1018 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC023024.2-201ENST00000623561 1993 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC15.16■□□□□ 0.02
LRCH3Q96II8 AC005089.1-201ENST00000619486 2241 ntBASIC15.16■□□□□ 0.02
LRCH3Q96II8 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LRCH3Q96II8 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.15■□□□□ 0.02
LRCH3Q96II8 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LRCH3Q96II8 AC232323.1-201ENST00000540724 2099 ntBASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms