Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 AL138725.1-201ENST00000407347 1314 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC11.8□□□□□ -0.52
HOXA1P49639 AC073335.2-201ENST00000610177 3441 ntBASIC11.8□□□□□ -0.52
HOXA1P49639 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.8□□□□□ -0.52
HOXA1P49639 SLC25A35-203ENST00000579192 2136 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HOXA1P49639 SLC7A15P-201ENST00000424028 1363 ntBASIC11.79□□□□□ -0.52
HOXA1P49639 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 LIMCH1-213ENST00000511496 3439 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 APOL3-205ENST00000397293 2214 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 AGER-206ENST00000375070 1463 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 PNMT-202ENST00000394246 821 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 AC123567.1-201ENST00000548294 1261 ntBASIC11.79□□□□□ -0.52
HOXA1P49639 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HOXA1P49639 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 CSAD-201ENST00000267085 2645 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 MATR3-227ENST00000618441 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 AC090643.2-201ENST00000623442 2029 ntBASIC11.79□□□□□ -0.52
HOXA1P49639 FBXW11-201ENST00000265094 4342 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 CEACAM20-203ENST00000614924 1809 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 DDC-213ENST00000617822 1809 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA1P49639 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
HOXA1P49639 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA1P49639 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 TBC1D29-202ENST00000580161 3018 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 HOTTIP-203ENST00000521028 3345 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HOXA1P49639 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 STK11IP-204ENST00000456909 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 A1CF-203ENST00000373995 2211 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 DUSP4-202ENST00000240101 2959 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 TREH-201ENST00000264029 2771 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms