Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
SOX3P41225 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
SOX3P41225 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
SOX3P41225 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.27
SOX3P41225 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.33□□□□□ -0.27
SOX3P41225 AGAP10P-201ENST00000454844 2418 ntBASIC13.33□□□□□ -0.27
SOX3P41225 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX3P41225 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 AC239868.1-201ENST00000369385 493 ntBASIC13.33□□□□□ -0.28
SOX3P41225 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC13.33□□□□□ -0.28
SOX3P41225 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC13.33□□□□□ -0.28
SOX3P41225 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.33□□□□□ -0.28
SOX3P41225 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.33□□□□□ -0.28
SOX3P41225 CHMP4BP1-201ENST00000556017 588 ntBASIC13.33□□□□□ -0.28
SOX3P41225 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 MIR6074-201ENST00000612054 107 ntBASIC13.33□□□□□ -0.28
SOX3P41225 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX3P41225 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
SOX3P41225 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
SOX3P41225 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX3P41225 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX3P41225 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC13.33□□□□□ -0.28
SOX3P41225 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC13.33□□□□□ -0.28
SOX3P41225 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
SOX3P41225 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.32□□□□□ -0.28
SOX3P41225 DMBT1P1-203ENST00000636837 4628 ntBASIC13.32□□□□□ -0.28
SOX3P41225 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 TSPY25P-201ENST00000429463 745 ntBASIC13.32□□□□□ -0.28
SOX3P41225 AC006335.1-201ENST00000445200 547 ntBASIC13.32□□□□□ -0.28
SOX3P41225 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 RN7SL574P-201ENST00000581512 297 ntBASIC13.32□□□□□ -0.28
SOX3P41225 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
SOX3P41225 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 AC097724.1-201ENST00000609581 426 ntBASIC13.32□□□□□ -0.28
SOX3P41225 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 AC068587.10-201ENST00000641210 219 ntBASIC13.32□□□□□ -0.28
SOX3P41225 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms