Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC104521.1-201ENST00000598582 279 ntTSL 5 BASIC16.32■□□□□ 0.2
BRCA1P38398 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.32■□□□□ 0.2
BRCA1P38398 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
BRCA1P38398 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.32■□□□□ 0.2
BRCA1P38398 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC16.32■□□□□ 0.2
BRCA1P38398 ZDHHC8P1-202ENST00000418264 1403 ntBASIC16.32■□□□□ 0.2
BRCA1P38398 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.32■□□□□ 0.2
BRCA1P38398 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRCA1P38398 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 TEPP-201ENST00000290871 1079 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 AC244197.2-201ENST00000370438 655 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 RN7SL487P-201ENST00000468140 344 ntBASIC16.31■□□□□ 0.2
BRCA1P38398 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC16.31■□□□□ 0.2
BRCA1P38398 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 FAM231B-201ENST00000600179 510 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
BRCA1P38398 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.31■□□□□ 0.2
BRCA1P38398 SIRPG-205ENST00000381583 1383 ntTSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 PI4KAP2-201ENST00000360806 2080 ntBASIC16.31■□□□□ 0.2
BRCA1P38398 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 AC091807.1-201ENST00000418838 1544 ntBASIC16.31■□□□□ 0.2
BRCA1P38398 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.31■□□□□ 0.2
BRCA1P38398 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 ULBP3-201ENST00000367339 988 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 LAMTOR2-203ENST00000368305 655 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
BRCA1P38398 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 TMEM253-206ENST00000556585 1236 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 AP003096.1-201ENST00000565199 503 ntTSL 3 BASIC16.31■□□□□ 0.2
BRCA1P38398 AC097634.2-201ENST00000615819 604 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 TUBB8P5-201ENST00000445286 1351 ntBASIC16.31■□□□□ 0.2
BRCA1P38398 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRCA1P38398 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC16.31■□□□□ 0.2
BRCA1P38398 KLHDC2-211ENST00000557247 1565 ntTSL 5 BASIC16.31■□□□□ 0.2
BRCA1P38398 C3orf36-201ENST00000408895 1668 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
BRCA1P38398 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
BRCA1P38398 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 ALLC-201ENST00000252505 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 NHP2-201ENST00000274606 865 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 RABL2B-203ENST00000395591 1987 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 SRSF9P1-201ENST00000399149 530 ntBASIC16.3■□□□□ 0.2
BRCA1P38398 WSB1-203ENST00000427287 1149 ntTSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 AQP7-207ENST00000447660 998 ntTSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
BRCA1P38398 OPRM1-210ENST00000452687 1352 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 AL391832.3-201ENST00000549744 846 ntTSL 3 BASIC16.3■□□□□ 0.2
BRCA1P38398 AL132780.2-203ENST00000555294 589 ntTSL 4 BASIC16.3■□□□□ 0.2
BRCA1P38398 WSB1-213ENST00000583193 552 ntTSL 4 BASIC16.3■□□□□ 0.2
BRCA1P38398 ZNF415-221ENST00000600574 563 ntTSL 3 BASIC16.3■□□□□ 0.2
BRCA1P38398 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC16.3■□□□□ 0.2
BRCA1P38398 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms