Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL9A1P20849 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL9A1P20849 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 AC106872.6-201ENST00000514228 1346 ntBASIC14.4□□□□□ -0.1
COL9A1P20849 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL9A1P20849 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 CCT8L1P-201ENST00000465400 1674 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
COL9A1P20849 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL9A1P20849 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 AC002076.1-201ENST00000435257 527 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 HNRNPA1P73-201ENST00000446472 928 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 AC007690.1-201ENST00000451924 468 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC14.39□□□□□ -0.11
COL9A1P20849 PARVG-208ENST00000466375 820 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 RNU6-362P-201ENST00000516736 90 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.39□□□□□ -0.11
COL9A1P20849 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC14.39□□□□□ -0.11
COL9A1P20849 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.39□□□□□ -0.11
COL9A1P20849 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC14.39□□□□□ -0.11
COL9A1P20849 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 AC005777.1-201ENST00000588332 187 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 ZNF714-203ENST00000596053 800 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 BNIP3P39-201ENST00000601077 554 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC14.39□□□□□ -0.11
COL9A1P20849 AC093783.1-201ENST00000612976 329 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 AC073869.4-201ENST00000620841 800 ntBASIC14.39□□□□□ -0.11
COL9A1P20849 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC14.39□□□□□ -0.11
COL9A1P20849 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC14.39□□□□□ -0.11
COL9A1P20849 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL9A1P20849 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL9A1P20849 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.38□□□□□ -0.11
COL9A1P20849 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.38□□□□□ -0.11
COL9A1P20849 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 RPS6-201ENST00000315377 863 ntTSL 3 BASIC14.38□□□□□ -0.11
COL9A1P20849 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 MYL1-202ENST00000352451 1065 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL9A1P20849 AC022080.1-201ENST00000366255 781 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 U73169.1-201ENST00000395152 367 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 TMEM256P1-201ENST00000430550 340 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.38□□□□□ -0.11
COL9A1P20849 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC14.38□□□□□ -0.11
COL9A1P20849 GYG1-209ENST00000483267 801 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC14.38□□□□□ -0.11
COL9A1P20849 ALG10-202ENST00000538927 571 ntTSL 5 BASIC14.38□□□□□ -0.11
COL9A1P20849 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.38□□□□□ -0.11
COL9A1P20849 AC090527.1-201ENST00000557965 431 ntTSL 3 BASIC14.38□□□□□ -0.11
COL9A1P20849 NDUFB10P1-201ENST00000567319 521 ntBASIC14.38□□□□□ -0.11
COL9A1P20849 PMM2-216ENST00000569958 698 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.38□□□□□ -0.11
COL9A1P20849 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms