Protein–RNA interactions for Protein: O43541

SMAD6, Mothers against decapentaplegic homolog 6, humanhuman

Known RBP Predictions only

Length 496 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6O43541 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
SMAD6O43541 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.15□□□□□ -0.14
SMAD6O43541 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.15□□□□□ -0.14
SMAD6O43541 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC14.15□□□□□ -0.14
SMAD6O43541 AC140113.1-201ENST00000603467 169 ntBASIC14.15□□□□□ -0.14
SMAD6O43541 MIR7845-201ENST00000618396 99 ntBASIC14.15□□□□□ -0.14
SMAD6O43541 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SMAD6O43541 LINC00244-201ENST00000625073 613 ntBASIC14.15□□□□□ -0.14
SMAD6O43541 SNX1-214ENST00000625244 324 ntTSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
SMAD6O43541 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 PES1P2-201ENST00000449745 1735 ntBASIC14.15□□□□□ -0.14
SMAD6O43541 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC14.15□□□□□ -0.14
SMAD6O43541 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.15□□□□□ -0.14
SMAD6O43541 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.15□□□□□ -0.14
SMAD6O43541 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
SMAD6O43541 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMAD6O43541 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.15
SMAD6O43541 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
SMAD6O43541 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC14.14□□□□□ -0.15
SMAD6O43541 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 AC005722.1-201ENST00000431878 964 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.14□□□□□ -0.15
SMAD6O43541 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 RN7SL375P-201ENST00000492442 298 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 PRSS3P1-201ENST00000503996 742 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 IGHV1-12-201ENST00000518307 205 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.14□□□□□ -0.15
SMAD6O43541 AL359091.4-201ENST00000610052 409 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 AP003419.4-201ENST00000616071 517 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 MIR6858-201ENST00000620733 67 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 CR392039.2-201ENST00000623182 509 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.14□□□□□ -0.15
SMAD6O43541 AL139424.3-202ENST00000641619 917 ntBASIC14.14□□□□□ -0.15
SMAD6O43541 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.14□□□□□ -0.15
SMAD6O43541 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.14□□□□□ -0.15
SMAD6O43541 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SMAD6O43541 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.14□□□□□ -0.15
SMAD6O43541 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SMAD6O43541 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SMAD6O43541 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms