Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CICP16-201ENST00000502609 2813 ntBASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
PDLIM3Q53GG5 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC011498.7-201ENST00000624986 2027 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 EPM2AIP1-201ENST00000322716 8126 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 PPT1-213ENST00000641319 2388 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 HSPA8P5-201ENST00000456928 2069 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ACKR1-201ENST00000368121 1240 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 Z97180.1-201ENST00000445173 988 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 CFL1-214ENST00000534769 758 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SORD2P-201ENST00000558556 1069 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC145423.3-201ENST00000615987 467 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AC011481.3-201ENST00000623895 5594 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 AL590440.2-201ENST00000641973 1595 ntBASIC11.84□□□□□ -0.51
PDLIM3Q53GG5 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
PDLIM3Q53GG5 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC11.83□□□□□ -0.51
PDLIM3Q53GG5 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
PDLIM3Q53GG5 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms