Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GOLGA2P8-201ENST00000505201 779 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA1P55317 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
FOXA1P55317 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA1P55317 AP000346.4-201ENST00000614827 381 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 KRT8P29-201ENST00000420409 1371 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC13.66□□□□□ -0.22
FOXA1P55317 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA1P55317 AC102953.2-201ENST00000609755 3026 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA1P55317 AC093462.1-201ENST00000621167 1683 ntBASIC13.66□□□□□ -0.22
FOXA1P55317 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA1P55317 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA1P55317 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 AC004899.1-201ENST00000424687 1714 ntBASIC13.65□□□□□ -0.22
FOXA1P55317 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA1P55317 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 YBX1P6-201ENST00000442962 1002 ntBASIC13.65□□□□□ -0.22
FOXA1P55317 AC021723.1-201ENST00000486306 515 ntBASIC13.65□□□□□ -0.22
FOXA1P55317 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA1P55317 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA1P55317 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.65□□□□□ -0.22
FOXA1P55317 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.65□□□□□ -0.22
FOXA1P55317 AL096828.3-201ENST00000615354 462 ntBASIC13.65□□□□□ -0.22
FOXA1P55317 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA1P55317 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA1P55317 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA1P55317 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
FOXA1P55317 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.23
FOXA1P55317 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.23
FOXA1P55317 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 BRD7P5-201ENST00000299197 1822 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
FOXA1P55317 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.64□□□□□ -0.23
FOXA1P55317 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
FOXA1P55317 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 Z98885.3-201ENST00000624882 1757 ntBASIC13.64□□□□□ -0.23
FOXA1P55317 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
FOXA1P55317 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms