Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.03■□□□□ 0.16
SMARCA1P28370 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SMARCA1P28370 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SMARCA1P28370 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SMARCA1P28370 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.02■□□□□ 0.16
SMARCA1P28370 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 Z69890.1-201ENST00000382990 339 ntBASIC16.02■□□□□ 0.16
SMARCA1P28370 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC16.02■□□□□ 0.16
SMARCA1P28370 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.02■□□□□ 0.16
SMARCA1P28370 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC16.02■□□□□ 0.16
SMARCA1P28370 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SMARCA1P28370 RN7SL375P-201ENST00000492442 298 ntBASIC16.02■□□□□ 0.16
SMARCA1P28370 AC093300.1-201ENST00000510368 1201 ntBASIC16.02■□□□□ 0.16
SMARCA1P28370 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.02■□□□□ 0.16
SMARCA1P28370 NPM1P43-201ENST00000558669 786 ntBASIC16.02■□□□□ 0.16
SMARCA1P28370 AC135983.4-201ENST00000564116 1262 ntBASIC16.02■□□□□ 0.16
SMARCA1P28370 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.02■□□□□ 0.16
SMARCA1P28370 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC16.02■□□□□ 0.16
SMARCA1P28370 RN7SL357P-201ENST00000581065 298 ntBASIC16.02■□□□□ 0.16
SMARCA1P28370 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC16.02■□□□□ 0.16
SMARCA1P28370 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.02■□□□□ 0.16
SMARCA1P28370 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SMARCA1P28370 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SMARCA1P28370 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SMARCA1P28370 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SMARCA1P28370 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
SMARCA1P28370 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SMARCA1P28370 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.02■□□□□ 0.15
SMARCA1P28370 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
SMARCA1P28370 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SMARCA1P28370 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SMARCA1P28370 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SMARCA1P28370 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 AL358781.1-202ENST00000321081 1360 ntBASIC16.01■□□□□ 0.15
SMARCA1P28370 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.01■□□□□ 0.15
SMARCA1P28370 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
SMARCA1P28370 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.01■□□□□ 0.15
SMARCA1P28370 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC16.01■□□□□ 0.15
SMARCA1P28370 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SMARCA1P28370 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 AC020763.3-201ENST00000625095 2904 ntBASIC16.01■□□□□ 0.15
SMARCA1P28370 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.01■□□□□ 0.15
SMARCA1P28370 MIR4722-201ENST00000578292 60 ntBASIC16.01■□□□□ 0.15
SMARCA1P28370 MIR4706-201ENST00000582134 82 ntBASIC16.01■□□□□ 0.15
SMARCA1P28370 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
SMARCA1P28370 RN7SL190P-201ENST00000582519 257 ntBASIC16.01■□□□□ 0.15
SMARCA1P28370 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
SMARCA1P28370 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC16.01■□□□□ 0.15
SMARCA1P28370 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SMARCA1P28370 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms