Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 AL109809.1-201ENST00000418979 1367 ntBASIC16.26■□□□□ 0.19
SHROOM1Q2M3G4 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 AC005014.1-201ENST00000432006 2976 ntBASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 GALP-202ENST00000440823 889 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 GULOP-201ENST00000454030 748 ntBASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 AC244197.1-201ENST00000456494 951 ntBASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 AC023968.2-201ENST00000560593 1049 ntBASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 ABHD17AP9-201ENST00000561925 548 ntBASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.25■□□□□ 0.19
SHROOM1Q2M3G4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 EML1-203ENST00000334192 4064 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AP000354.1-201ENST00000396982 456 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 MIR1307-201ENST00000408840 149 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AL512599.1-201ENST00000430724 685 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AC026470.1-201ENST00000478038 846 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 GDNF-207ENST00000515058 764 ntTSL 5 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AC087203.1-201ENST00000532111 1181 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 BAK1P2-201ENST00000532665 631 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AL160191.2-201ENST00000603975 601 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 AL139339.2-201ENST00000608063 657 ntBASIC16.24■□□□□ 0.19
SHROOM1Q2M3G4 MIR8071-1-201ENST00000616769 65 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms