Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 CYMP-203ENST00000474680 1263 ntBASIC12.5□□□□□ -0.41
SOX2P48431 AP001889.1-201ENST00000525414 633 ntBASIC12.5□□□□□ -0.41
SOX2P48431 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.5□□□□□ -0.41
SOX2P48431 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.5□□□□□ -0.41
SOX2P48431 GNRHR2-203ENST00000581100 1187 ntBASIC12.5□□□□□ -0.41
SOX2P48431 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.5□□□□□ -0.41
SOX2P48431 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 AJ011932.1-201ENST00000621707 465 ntBASIC12.5□□□□□ -0.41
SOX2P48431 RPSAP52-203ENST00000622976 1023 ntBASIC12.5□□□□□ -0.41
SOX2P48431 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 AL354989.2-201ENST00000435838 1540 ntBASIC12.5□□□□□ -0.41
SOX2P48431 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 ABCD1P2-201ENST00000429313 1601 ntBASIC12.5□□□□□ -0.41
SOX2P48431 AL355102.3-201ENST00000554299 1678 ntBASIC12.5□□□□□ -0.41
SOX2P48431 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
SOX2P48431 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
SOX2P48431 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC12.5□□□□□ -0.41
SOX2P48431 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC12.5□□□□□ -0.41
SOX2P48431 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SOX2P48431 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
SOX2P48431 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
SOX2P48431 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 TMBIM7P-202ENST00000641474 1516 ntBASIC12.49□□□□□ -0.41
SOX2P48431 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 MIR661-201ENST00000384842 89 ntBASIC12.49□□□□□ -0.41
SOX2P48431 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 DGCR5-201ENST00000399539 862 ntBASIC12.49□□□□□ -0.41
SOX2P48431 AC136604.1-202ENST00000425471 771 ntBASIC12.49□□□□□ -0.41
SOX2P48431 C2orf27AP3-201ENST00000434123 579 ntBASIC12.49□□□□□ -0.41
SOX2P48431 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC12.49□□□□□ -0.41
SOX2P48431 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.49□□□□□ -0.41
SOX2P48431 COX5BP1-201ENST00000507622 393 ntBASIC12.49□□□□□ -0.41
SOX2P48431 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.49□□□□□ -0.41
SOX2P48431 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.49□□□□□ -0.41
SOX2P48431 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.49□□□□□ -0.41
SOX2P48431 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
SOX2P48431 AC021016.3-201ENST00000608367 477 ntBASIC12.49□□□□□ -0.41
SOX2P48431 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC12.49□□□□□ -0.41
SOX2P48431 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.49□□□□□ -0.41
SOX2P48431 AL136301.1-201ENST00000615830 422 ntBASIC12.49□□□□□ -0.41
SOX2P48431 AL354718.3-201ENST00000616414 581 ntBASIC12.49□□□□□ -0.41
SOX2P48431 CR382287.1-201ENST00000623954 586 ntBASIC12.49□□□□□ -0.41
SOX2P48431 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC12.49□□□□□ -0.41
SOX2P48431 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
SOX2P48431 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC12.49□□□□□ -0.41
SOX2P48431 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC12.48□□□□□ -0.41
SOX2P48431 AC011481.3-201ENST00000623895 5594 ntBASIC12.48□□□□□ -0.41
SOX2P48431 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms