Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
NKX2-1P43699 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
NKX2-1P43699 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
NKX2-1P43699 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC022144.1-201ENST00000602255 1580 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AP000593.2-201ENST00000542775 1433 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC027369.3-201ENST00000530465 3707 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
NKX2-1P43699 SPDYE19P-201ENST00000338590 713 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
NKX2-1P43699 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 RN7SKP175-201ENST00000408472 289 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 MYCLP2-201ENST00000449268 967 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 AL035414.1-201ENST00000451327 857 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC092183.1-201ENST00000469884 875 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC011495.1-201ENST00000498085 584 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
NKX2-1P43699 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC11.62□□□□□ -0.55
NKX2-1P43699 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC11.62□□□□□ -0.55
NKX2-1P43699 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC11.62□□□□□ -0.55
NKX2-1P43699 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC11.62□□□□□ -0.55
NKX2-1P43699 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC11.62□□□□□ -0.55
NKX2-1P43699 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 AC106028.4-201ENST00000614509 607 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 AC005252.2-201ENST00000624630 1141 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 ORC5-208ENST00000626700 344 ntTSL 3 BASIC11.62□□□□□ -0.55
NKX2-1P43699 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC022400.8-201ENST00000623453 3599 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC11.62□□□□□ -0.55
NKX2-1P43699 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 AC008620.2-201ENST00000510294 1569 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
NKX2-1P43699 SALL4P6-201ENST00000429385 1691 ntBASIC11.62□□□□□ -0.55
NKX2-1P43699 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
NKX2-1P43699 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC11.61□□□□□ -0.55
NKX2-1P43699 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 PCNX4-202ENST00000391611 4073 ntTSL 2 BASIC11.61□□□□□ -0.55
NKX2-1P43699 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
NKX2-1P43699 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC11.61□□□□□ -0.55
NKX2-1P43699 AC009093.2-202ENST00000620513 2079 ntBASIC11.61□□□□□ -0.55
NKX2-1P43699 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC11.61□□□□□ -0.55
NKX2-1P43699 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC11.61□□□□□ -0.55
NKX2-1P43699 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC11.61□□□□□ -0.55
NKX2-1P43699 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
NKX2-1P43699 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.61□□□□□ -0.55
NKX2-1P43699 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms