Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-CQ95604 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 LINC00554-201ENST00000564841 3011 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 AC136621.1-201ENST00000624017 2304 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC14.36□□□□□ -0.11
HLA-CQ95604 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC14.36□□□□□ -0.11
HLA-CQ95604 SDCBP2P1-201ENST00000416115 614 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 AC079325.1-201ENST00000430386 857 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 HNRNPA1P59-201ENST00000430583 918 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 JPT1-205ENST00000470924 663 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC14.36□□□□□ -0.11
HLA-CQ95604 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC14.36□□□□□ -0.11
HLA-CQ95604 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HLA-CQ95604 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
HLA-CQ95604 AC144521.1-201ENST00000607148 956 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 AL109954.3-201ENST00000615088 558 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 AC015912.3-201ENST00000619432 348 ntBASIC14.36□□□□□ -0.11
HLA-CQ95604 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-CQ95604 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-CQ95604 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-CQ95604 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-CQ95604 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HLA-CQ95604 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-CQ95604 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 MIR181D-201ENST00000384853 137 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-CQ95604 HNRNPABP1-201ENST00000406003 734 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 IQCF4-203ENST00000428561 420 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-CQ95604 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-CQ95604 SRP9P1-201ENST00000445874 261 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-CQ95604 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC14.35□□□□□ -0.11
HLA-CQ95604 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 AC087272.1-201ENST00000523624 533 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 ABCC6P2-201ENST00000526069 590 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 AL136298.3-201ENST00000556746 445 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-CQ95604 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-CQ95604 MIR4326-201ENST00000582203 59 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-CQ95604 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-CQ95604 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC14.35□□□□□ -0.11
HLA-CQ95604 MIR6074-201ENST00000612054 107 ntBASIC14.35□□□□□ -0.11
HLA-CQ95604 AC008622.3-201ENST00000621170 600 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms