Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 ELK2AP-201ENST00000392510 1007 ntBASIC12.34□□□□□ -0.43
UBA52P62987 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.34□□□□□ -0.43
UBA52P62987 CD8B2-202ENST00000417670 633 ntBASIC12.34□□□□□ -0.43
UBA52P62987 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 AC004898.1-201ENST00000451057 766 ntBASIC12.34□□□□□ -0.43
UBA52P62987 AKR7A2P1-201ENST00000460134 915 ntBASIC12.34□□□□□ -0.43
UBA52P62987 AC091804.1-201ENST00000486888 567 ntBASIC12.34□□□□□ -0.43
UBA52P62987 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC12.34□□□□□ -0.43
UBA52P62987 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC12.34□□□□□ -0.43
UBA52P62987 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 RNA5SP423-201ENST00000517127 109 ntBASIC12.34□□□□□ -0.43
UBA52P62987 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC12.34□□□□□ -0.43
UBA52P62987 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 AC104982.3-201ENST00000581995 514 ntBASIC12.34□□□□□ -0.43
UBA52P62987 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.34□□□□□ -0.43
UBA52P62987 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
UBA52P62987 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 AC138028.6-201ENST00000616106 1482 ntBASIC12.34□□□□□ -0.43
UBA52P62987 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.43
UBA52P62987 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
UBA52P62987 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
UBA52P62987 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
UBA52P62987 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
UBA52P62987 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
UBA52P62987 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 AL022323.5-201ENST00000624101 2059 ntBASIC12.33□□□□□ -0.44
UBA52P62987 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 AC072061.1-201ENST00000569710 2234 ntBASIC12.33□□□□□ -0.44
UBA52P62987 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC12.33□□□□□ -0.44
UBA52P62987 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.33□□□□□ -0.44
UBA52P62987 NEU3-202ENST00000526068 431 ntTSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.33□□□□□ -0.44
UBA52P62987 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.33□□□□□ -0.44
UBA52P62987 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC12.33□□□□□ -0.44
UBA52P62987 AC020914.3-201ENST00000594712 304 ntBASIC12.33□□□□□ -0.44
UBA52P62987 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.33□□□□□ -0.44
UBA52P62987 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.33□□□□□ -0.44
UBA52P62987 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC12.33□□□□□ -0.44
UBA52P62987 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.33□□□□□ -0.44
UBA52P62987 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
UBA52P62987 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC12.33□□□□□ -0.44
UBA52P62987 AC107375.1-201ENST00000564464 2231 ntBASIC12.33□□□□□ -0.44
UBA52P62987 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
UBA52P62987 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC12.32□□□□□ -0.44
UBA52P62987 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms