Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 FBXO39-201ENST00000321535 1677 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 A1BG-AS1-203ENST00000594950 1718 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
USH2AO75445 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 AL139412.1-201ENST00000441085 523 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 RPL35P1-201ENST00000450819 370 ntBASIC6.05□□□□□ -1.44
USH2AO75445 ROM1-205ENST00000534093 862 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 TMEM253-206ENST00000556585 1236 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 AC021439.1-201ENST00000562975 591 ntTSL 4 BASIC6.05□□□□□ -1.44
USH2AO75445 AC092368.1-201ENST00000568014 733 ntBASIC6.05□□□□□ -1.44
USH2AO75445 MIR4526-201ENST00000583168 87 ntBASIC6.05□□□□□ -1.44
USH2AO75445 MIR4527HG-201ENST00000586905 675 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 CFAP36-205ENST00000407816 1125 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 MIR1307-201ENST00000408840 149 ntBASIC6.05□□□□□ -1.44
USH2AO75445 AC041040.1-201ENST00000425197 460 ntBASIC6.05□□□□□ -1.44
USH2AO75445 SLC10A7-208ENST00000511374 869 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC6.05□□□□□ -1.44
USH2AO75445 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 AC104581.4-201ENST00000623126 3052 ntBASIC6.05□□□□□ -1.44
USH2AO75445 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 AL157832.2-205ENST00000597245 1649 ntBASIC6.05□□□□□ -1.44
USH2AO75445 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC6.05□□□□□ -1.44
USH2AO75445 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
USH2AO75445 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC6.05□□□□□ -1.44
USH2AO75445 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 AC064836.1-201ENST00000405197 704 ntBASIC6.04□□□□□ -1.44
USH2AO75445 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 AC103925.1-201ENST00000453155 771 ntTSL 3 BASIC6.04□□□□□ -1.44
USH2AO75445 ST3GAL1P1-201ENST00000513810 1014 ntBASIC6.04□□□□□ -1.44
USH2AO75445 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC6.04□□□□□ -1.44
USH2AO75445 OPN1MW-201ENST00000595290 1242 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC6.04□□□□□ -1.44
USH2AO75445 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC6.04□□□□□ -1.44
USH2AO75445 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 LINC01115-202ENST00000621134 1519 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 NEK11-213ENST00000511262 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 AL356583.3-201ENST00000412354 417 ntBASIC6.04□□□□□ -1.44
USH2AO75445 AC006001.3-205ENST00000428370 579 ntBASIC6.04□□□□□ -1.44
USH2AO75445 AP000343.1-201ENST00000440602 385 ntBASIC6.04□□□□□ -1.44
USH2AO75445 AC006372.1-201ENST00000449903 546 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 PQLC2L-204ENST00000459838 850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 PQLC2L-206ENST00000468043 883 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 AC010395.2-201ENST00000509899 904 ntBASIC6.04□□□□□ -1.44
USH2AO75445 PTS-204ENST00000525803 625 ntTSL 3 BASIC6.04□□□□□ -1.44
USH2AO75445 AC127496.5-202ENST00000572036 869 ntTSL 5 BASIC6.04□□□□□ -1.44
USH2AO75445 MIR3194-201ENST00000582236 73 ntBASIC6.04□□□□□ -1.44
USH2AO75445 AL356423.1-201ENST00000604953 538 ntBASIC6.04□□□□□ -1.44
USH2AO75445 UBA3-212ENST00000630585 390 ntTSL 4 BASIC6.04□□□□□ -1.44
USH2AO75445 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 SDR16C5-203ENST00000522671 1988 ntTSL 2 BASIC6.04□□□□□ -1.44
USH2AO75445 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 ANXA13-201ENST00000262219 1588 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
USH2AO75445 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms