Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 AC120024.1-201ENST00000562672 995 ntBASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LIN7CQ9NUP9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIN7CQ9NUP9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIN7CQ9NUP9 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LIN7CQ9NUP9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIN7CQ9NUP9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIN7CQ9NUP9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIN7CQ9NUP9 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LIN7CQ9NUP9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIN7CQ9NUP9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIN7CQ9NUP9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIN7CQ9NUP9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.58■□□□□ 0.56
LIN7CQ9NUP9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
LIN7CQ9NUP9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIN7CQ9NUP9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIN7CQ9NUP9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 C1orf229-201ENST00000623686 2258 ntBASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 ALDH1A3-203ENST00000557963 1670 ntBASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LIN7CQ9NUP9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 MIR4281-201ENST00000580852 62 ntBASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LIN7CQ9NUP9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LIN7CQ9NUP9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms