Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.36■■□□□ 1.49
NUCKS1Q9H1E3 THA1P-201ENST00000590384 1145 ntBASIC24.36■■□□□ 1.49
NUCKS1Q9H1E3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NUCKS1Q9H1E3 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.36■■□□□ 1.49
NUCKS1Q9H1E3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NUCKS1Q9H1E3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NUCKS1Q9H1E3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 C1orf229-201ENST00000623686 2258 ntBASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 MIR4281-201ENST00000580852 62 ntBASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.35■■□□□ 1.49
NUCKS1Q9H1E3 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 AC004448.1-201ENST00000458332 883 ntBASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.34■■□□□ 1.49
NUCKS1Q9H1E3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NUCKS1Q9H1E3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.48
NUCKS1Q9H1E3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
NUCKS1Q9H1E3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.48
NUCKS1Q9H1E3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
NUCKS1Q9H1E3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
NUCKS1Q9H1E3 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.3■■□□□ 1.48
NUCKS1Q9H1E3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.29■■□□□ 1.48
NUCKS1Q9H1E3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
NUCKS1Q9H1E3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
NUCKS1Q9H1E3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
NUCKS1Q9H1E3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.29■■□□□ 1.48
NUCKS1Q9H1E3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NUCKS1Q9H1E3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC24.28■■□□□ 1.48
NUCKS1Q9H1E3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.28■■□□□ 1.48
NUCKS1Q9H1E3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.28■■□□□ 1.48
NUCKS1Q9H1E3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
NUCKS1Q9H1E3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 AC079630.1-202ENST00000618127 1840 ntBASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
NUCKS1Q9H1E3 ESRRAP2-201ENST00000418437 1549 ntBASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
NUCKS1Q9H1E3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.25■■□□□ 1.47
NUCKS1Q9H1E3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
NUCKS1Q9H1E3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms