Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.21■□□□□ 0.83
PTP4A1Q93096 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PTP4A1Q93096 LINC00565-201ENST00000562710 2331 ntBASIC20.21■□□□□ 0.83
PTP4A1Q93096 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTP4A1Q93096 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTP4A1Q93096 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.2■□□□□ 0.82
PTP4A1Q93096 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PTP4A1Q93096 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
PTP4A1Q93096 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PTP4A1Q93096 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTP4A1Q93096 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PTP4A1Q93096 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.19■□□□□ 0.82
PTP4A1Q93096 PVT1_1.1-201ENST00000615125 194 ntBASIC20.19■□□□□ 0.82
PTP4A1Q93096 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTP4A1Q93096 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PTP4A1Q93096 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.18■□□□□ 0.82
PTP4A1Q93096 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
PTP4A1Q93096 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 AC120024.1-201ENST00000562672 995 ntBASIC20.18■□□□□ 0.82
PTP4A1Q93096 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.18■□□□□ 0.82
PTP4A1Q93096 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 LINC00526-201ENST00000581067 1875 ntBASIC20.18■□□□□ 0.82
PTP4A1Q93096 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTP4A1Q93096 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTP4A1Q93096 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTP4A1Q93096 AF131216.4-201ENST00000638924 1588 ntBASIC20.17■□□□□ 0.82
PTP4A1Q93096 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTP4A1Q93096 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PTP4A1Q93096 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTP4A1Q93096 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTP4A1Q93096 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTP4A1Q93096 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.17■□□□□ 0.82
PTP4A1Q93096 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PTP4A1Q93096 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.16■□□□□ 0.82
PTP4A1Q93096 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.16■□□□□ 0.82
PTP4A1Q93096 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
PTP4A1Q93096 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTP4A1Q93096 AC079630.1-202ENST00000618127 1840 ntBASIC20.16■□□□□ 0.82
PTP4A1Q93096 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTP4A1Q93096 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTP4A1Q93096 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PTP4A1Q93096 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.15■□□□□ 0.82
PTP4A1Q93096 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTP4A1Q93096 MIR4508-201ENST00000584178 70 ntBASIC20.15■□□□□ 0.82
PTP4A1Q93096 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PTP4A1Q93096 ECEL1P1-201ENST00000373592 1742 ntBASIC20.15■□□□□ 0.82
PTP4A1Q93096 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PTP4A1Q93096 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
PTP4A1Q93096 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
PTP4A1Q93096 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
PTP4A1Q93096 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.14■□□□□ 0.82
PTP4A1Q93096 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTP4A1Q93096 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.14■□□□□ 0.81
PTP4A1Q93096 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.14■□□□□ 0.81
PTP4A1Q93096 KRT18P24-201ENST00000344739 1156 ntBASIC20.14■□□□□ 0.81
PTP4A1Q93096 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTP4A1Q93096 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 YBX1P4-201ENST00000392794 808 ntBASIC20.13■□□□□ 0.81
PTP4A1Q93096 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTP4A1Q93096 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTP4A1Q93096 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
PTP4A1Q93096 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTP4A1Q93096 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTP4A1Q93096 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTP4A1Q93096 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTP4A1Q93096 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.12■□□□□ 0.81
PTP4A1Q93096 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms