Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL138724.1-201ENST00000606771 1088 ntBASIC6.87□□□□□ -1.31
SYNE1Q8NF91 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AC092437.1-201ENST00000624794 1048 ntBASIC6.86□□□□□ -1.31
SYNE1Q8NF91 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 MIR4767-201ENST00000582827 78 ntBASIC6.86□□□□□ -1.31
SYNE1Q8NF91 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 CEBPA-AS1-201ENST00000592982 2198 ntBASIC6.86□□□□□ -1.31
SYNE1Q8NF91 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AC005703.6-201ENST00000623265 1329 ntBASIC6.86□□□□□ -1.31
SYNE1Q8NF91 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC6.86□□□□□ -1.31
SYNE1Q8NF91 AC092803.2-201ENST00000564287 1899 ntBASIC6.85□□□□□ -1.31
SYNE1Q8NF91 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 AC233992.3-201ENST00000607491 485 ntBASIC6.85□□□□□ -1.31
SYNE1Q8NF91 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 IKBKGP1-201ENST00000612193 1073 ntBASIC6.85□□□□□ -1.31
SYNE1Q8NF91 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 SHF-207ENST00000560540 2062 ntTSL 5 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
SYNE1Q8NF91 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 DUSP8P4-201ENST00000399538 1761 ntBASIC6.84□□□□□ -1.31
SYNE1Q8NF91 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC6.84□□□□□ -1.31
SYNE1Q8NF91 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms