Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
USHBP1Q8N6Y0 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
USHBP1Q8N6Y0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 MIR6084-201ENST00000622012 110 ntBASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
USHBP1Q8N6Y0 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
USHBP1Q8N6Y0 AC138932.3-201ENST00000567634 1902 ntBASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 AC010525.1-201ENST00000585559 441 ntBASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC29.9■■■□□ 2.38
USHBP1Q8N6Y0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
USHBP1Q8N6Y0 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
USHBP1Q8N6Y0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC29.89■■■□□ 2.38
USHBP1Q8N6Y0 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
USHBP1Q8N6Y0 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 AC133637.1-201ENST00000624115 1537 ntBASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
USHBP1Q8N6Y0 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 NME4-202ENST00000382940 766 ntTSL 3 BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 YBX1P1-201ENST00000445822 960 ntBASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 AP003733.4-201ENST00000623785 1697 ntBASIC29.87■■■□□ 2.37
USHBP1Q8N6Y0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 KRT18P5-201ENST00000436075 1291 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 AC034268.1-201ENST00000441047 882 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L2-201ENST00000561772 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L6-201ENST00000626483 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L1-201ENST00000627662 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L8-201ENST00000629013 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L3-201ENST00000630187 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L7-201ENST00000630678 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 DUX4L5-201ENST00000630834 1275 ntBASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC29.86■■■□□ 2.37
USHBP1Q8N6Y0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
USHBP1Q8N6Y0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 IGHV3-19-201ENST00000521488 291 ntBASIC29.84■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms