Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CX3CL1P78423 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.04■□□□□ 0.48
CX3CL1P78423 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.04■□□□□ 0.48
CX3CL1P78423 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CX3CL1P78423 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CX3CL1P78423 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.03■□□□□ 0.48
CX3CL1P78423 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.03■□□□□ 0.48
CX3CL1P78423 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.03■□□□□ 0.48
CX3CL1P78423 MTDHP2-201ENST00000601468 714 ntBASIC18.03■□□□□ 0.48
CX3CL1P78423 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CX3CL1P78423 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CX3CL1P78423 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CX3CL1P78423 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CX3CL1P78423 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CX3CL1P78423 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CX3CL1P78423 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CX3CL1P78423 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CX3CL1P78423 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CX3CL1P78423 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CX3CL1P78423 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.02■□□□□ 0.48
CX3CL1P78423 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CX3CL1P78423 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CX3CL1P78423 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CX3CL1P78423 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CX3CL1P78423 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CX3CL1P78423 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CX3CL1P78423 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CX3CL1P78423 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CX3CL1P78423 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CX3CL1P78423 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CX3CL1P78423 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.01■□□□□ 0.47
CX3CL1P78423 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.01■□□□□ 0.47
CX3CL1P78423 AC010997.5-201ENST00000609182 354 ntBASIC18.01■□□□□ 0.47
CX3CL1P78423 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CX3CL1P78423 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CX3CL1P78423 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.01■□□□□ 0.47
CX3CL1P78423 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CX3CL1P78423 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
CX3CL1P78423 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18■□□□□ 0.47
CX3CL1P78423 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 GUSBP5-201ENST00000418136 578 ntBASIC18■□□□□ 0.47
CX3CL1P78423 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18■□□□□ 0.47
CX3CL1P78423 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18■□□□□ 0.47
CX3CL1P78423 UNC93B8-201ENST00000511903 705 ntBASIC18■□□□□ 0.47
CX3CL1P78423 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CX3CL1P78423 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CX3CL1P78423 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
CX3CL1P78423 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CX3CL1P78423 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CX3CL1P78423 AC005703.6-201ENST00000623265 1329 ntBASIC17.99■□□□□ 0.47
CX3CL1P78423 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.99■□□□□ 0.47
CX3CL1P78423 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CX3CL1P78423 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.98■□□□□ 0.47
CX3CL1P78423 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CX3CL1P78423 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.98■□□□□ 0.47
CX3CL1P78423 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.98■□□□□ 0.47
CX3CL1P78423 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC17.98■□□□□ 0.47
CX3CL1P78423 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.98■□□□□ 0.47
CX3CL1P78423 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CX3CL1P78423 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CX3CL1P78423 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CX3CL1P78423 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CX3CL1P78423 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CX3CL1P78423 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CX3CL1P78423 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CX3CL1P78423 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CX3CL1P78423 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CX3CL1P78423 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CX3CL1P78423 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CX3CL1P78423 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CX3CL1P78423 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms