Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 AC009086.3-201ENST00000623486 1008 ntBASIC23.19■■□□□ 1.3
SLC6A4P31645 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A4P31645 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A4P31645 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A4P31645 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.18■■□□□ 1.3
SLC6A4P31645 AC019069.1-201ENST00000610008 1333 ntBASIC23.18■■□□□ 1.3
SLC6A4P31645 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A4P31645 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.18■■□□□ 1.3
SLC6A4P31645 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.18■■□□□ 1.3
SLC6A4P31645 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.18■■□□□ 1.3
SLC6A4P31645 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A4P31645 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A4P31645 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A4P31645 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A4P31645 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
SLC6A4P31645 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A4P31645 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A4P31645 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A4P31645 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A4P31645 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.17■■□□□ 1.3
SLC6A4P31645 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.17■■□□□ 1.3
SLC6A4P31645 AC133561.4-201ENST00000566112 224 ntBASIC23.17■■□□□ 1.3
SLC6A4P31645 AC005837.3-201ENST00000612163 286 ntBASIC23.17■■□□□ 1.3
SLC6A4P31645 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A4P31645 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A4P31645 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.16■■□□□ 1.3
SLC6A4P31645 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
SLC6A4P31645 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.16■■□□□ 1.3
SLC6A4P31645 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.16■■□□□ 1.3
SLC6A4P31645 AL031432.3-201ENST00000607698 485 ntBASIC23.16■■□□□ 1.3
SLC6A4P31645 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.16■■□□□ 1.3
SLC6A4P31645 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.16■■□□□ 1.3
SLC6A4P31645 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A4P31645 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.15■■□□□ 1.3
SLC6A4P31645 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
SLC6A4P31645 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SLC6A4P31645 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.15■■□□□ 1.3
SLC6A4P31645 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.15■■□□□ 1.3
SLC6A4P31645 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A4P31645 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.14■■□□□ 1.3
SLC6A4P31645 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A4P31645 MIR3181-201ENST00000578512 73 ntBASIC23.14■■□□□ 1.29
SLC6A4P31645 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.14■■□□□ 1.29
SLC6A4P31645 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.14■■□□□ 1.29
SLC6A4P31645 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A4P31645 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
SLC6A4P31645 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 AC093323.1-202ENST00000635031 2045 ntBASIC23.13■■□□□ 1.29
SLC6A4P31645 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.13■■□□□ 1.29
SLC6A4P31645 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.13■■□□□ 1.29
SLC6A4P31645 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
SLC6A4P31645 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.13■■□□□ 1.29
SLC6A4P31645 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
SLC6A4P31645 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.13■■□□□ 1.29
SLC6A4P31645 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A4P31645 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 AC144652.1-201ENST00000609974 1624 ntBASIC23.12■■□□□ 1.29
SLC6A4P31645 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.12■■□□□ 1.29
SLC6A4P31645 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.12■■□□□ 1.29
SLC6A4P31645 MIR4767-201ENST00000582827 78 ntBASIC23.12■■□□□ 1.29
SLC6A4P31645 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
SLC6A4P31645 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SLC6A4P31645 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.12■■□□□ 1.29
SLC6A4P31645 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
SLC6A4P31645 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.11■■□□□ 1.29
SLC6A4P31645 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SLC6A4P31645 AC079630.1-202ENST00000618127 1840 ntBASIC23.11■■□□□ 1.29
SLC6A4P31645 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.11■■□□□ 1.29
SLC6A4P31645 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.11■■□□□ 1.29
SLC6A4P31645 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.11■■□□□ 1.29
SLC6A4P31645 AL138724.1-201ENST00000606771 1088 ntBASIC23.11■■□□□ 1.29
SLC6A4P31645 pRNA.6-201ENST00000610482 90 ntBASIC23.11■■□□□ 1.29
SLC6A4P31645 pRNA.5-201ENST00000612139 90 ntBASIC23.11■■□□□ 1.29
SLC6A4P31645 pRNA.11-201ENST00000618423 90 ntBASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms