Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
MMP1P03956 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MMP1P03956 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.96■■□□□ 1.75
MMP1P03956 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC25.96■■□□□ 1.75
MMP1P03956 AC010997.5-201ENST00000609182 354 ntBASIC25.96■■□□□ 1.75
MMP1P03956 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.96■■□□□ 1.75
MMP1P03956 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
MMP1P03956 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
MMP1P03956 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
MMP1P03956 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MMP1P03956 AC079630.1-202ENST00000618127 1840 ntBASIC25.95■■□□□ 1.75
MMP1P03956 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MMP1P03956 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
MMP1P03956 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
MMP1P03956 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
MMP1P03956 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.95■■□□□ 1.74
MMP1P03956 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
MMP1P03956 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.95■■□□□ 1.74
MMP1P03956 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.94■■□□□ 1.74
MMP1P03956 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
MMP1P03956 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.94■■□□□ 1.74
MMP1P03956 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.94■■□□□ 1.74
MMP1P03956 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC25.94■■□□□ 1.74
MMP1P03956 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.94■■□□□ 1.74
MMP1P03956 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.94■■□□□ 1.74
MMP1P03956 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
MMP1P03956 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.93■■□□□ 1.74
MMP1P03956 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.93■■□□□ 1.74
MMP1P03956 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
MMP1P03956 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
MMP1P03956 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.93■■□□□ 1.74
MMP1P03956 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
MMP1P03956 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.92■■□□□ 1.74
MMP1P03956 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
MMP1P03956 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.92■■□□□ 1.74
MMP1P03956 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.92■■□□□ 1.74
MMP1P03956 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MMP1P03956 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.91■■□□□ 1.74
MMP1P03956 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.91■■□□□ 1.74
MMP1P03956 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
MMP1P03956 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MMP1P03956 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
MMP1P03956 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
MMP1P03956 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
MMP1P03956 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MMP1P03956 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
MMP1P03956 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.9■■□□□ 1.74
MMP1P03956 C9orf163-202ENST00000624034 2573 ntBASIC25.9■■□□□ 1.74
MMP1P03956 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.9■■□□□ 1.74
MMP1P03956 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MMP1P03956 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.9■■□□□ 1.74
MMP1P03956 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.9■■□□□ 1.74
MMP1P03956 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.9■■□□□ 1.74
MMP1P03956 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.9■■□□□ 1.74
MMP1P03956 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
MMP1P03956 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
MMP1P03956 KRT16P3-201ENST00000439127 1283 ntBASIC25.89■■□□□ 1.74
MMP1P03956 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
MMP1P03956 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.89■■□□□ 1.74
MMP1P03956 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.88■■□□□ 1.73
MMP1P03956 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
MMP1P03956 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MMP1P03956 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MMP1P03956 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MMP1P03956 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
MMP1P03956 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
MMP1P03956 AC068473.5-201ENST00000616428 2072 ntBASIC25.87■■□□□ 1.73
MMP1P03956 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.87■■□□□ 1.73
MMP1P03956 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MMP1P03956 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
MMP1P03956 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.87■■□□□ 1.73
MMP1P03956 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.87■■□□□ 1.73
MMP1P03956 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MMP1P03956 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
MMP1P03956 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
MMP1P03956 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.86■■□□□ 1.73
MMP1P03956 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MMP1P03956 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.86■■□□□ 1.73
MMP1P03956 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MMP1P03956 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
MMP1P03956 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.86■■□□□ 1.73
MMP1P03956 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
MMP1P03956 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MMP1P03956 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
MMP1P03956 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
MMP1P03956 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
MMP1P03956 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.85■■□□□ 1.73
MMP1P03956 MIR6724-1-201ENST00000616420 92 ntBASIC25.85■■□□□ 1.73
MMP1P03956 MIR6724-2-201ENST00000616483 92 ntBASIC25.85■■□□□ 1.73
MMP1P03956 MIR6724-4-201ENST00000617390 92 ntBASIC25.85■■□□□ 1.73
MMP1P03956 MIR6724-3-201ENST00000622482 92 ntBASIC25.85■■□□□ 1.73
MMP1P03956 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.85■■□□□ 1.73
MMP1P03956 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
MMP1P03956 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms