Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP1O94782 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.7■■□□□ 1.22
USP1O94782 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP1O94782 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.7■■□□□ 1.22
USP1O94782 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.7■■□□□ 1.22
USP1O94782 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP1O94782 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.7■■□□□ 1.22
USP1O94782 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
USP1O94782 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
USP1O94782 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP1O94782 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.7■■□□□ 1.22
USP1O94782 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.69■■□□□ 1.22
USP1O94782 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.69■■□□□ 1.22
USP1O94782 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.69■■□□□ 1.22
USP1O94782 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 RARRES2P1-201ENST00000474487 481 ntBASIC22.69■■□□□ 1.22
USP1O94782 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.69■■□□□ 1.22
USP1O94782 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.69■■□□□ 1.22
USP1O94782 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
USP1O94782 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.68■■□□□ 1.22
USP1O94782 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP1O94782 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.68■■□□□ 1.22
USP1O94782 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.68■■□□□ 1.22
USP1O94782 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP1O94782 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.68■■□□□ 1.22
USP1O94782 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP1O94782 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
USP1O94782 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.68■■□□□ 1.22
USP1O94782 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.68■■□□□ 1.22
USP1O94782 SNX5-217ENST00000606557 1087 ntBASIC22.68■■□□□ 1.22
USP1O94782 AC137630.3-201ENST00000607245 391 ntBASIC22.68■■□□□ 1.22
USP1O94782 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.68■■□□□ 1.22
USP1O94782 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
USP1O94782 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
USP1O94782 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
USP1O94782 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.68■■□□□ 1.22
USP1O94782 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP1O94782 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP1O94782 AC079630.1-202ENST00000618127 1840 ntBASIC22.67■■□□□ 1.22
USP1O94782 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.67■■□□□ 1.22
USP1O94782 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.67■■□□□ 1.22
USP1O94782 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.67■■□□□ 1.22
USP1O94782 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
USP1O94782 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
USP1O94782 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.66■■□□□ 1.22
USP1O94782 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
USP1O94782 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
USP1O94782 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
USP1O94782 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
USP1O94782 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
USP1O94782 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.65■■□□□ 1.22
USP1O94782 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.65■■□□□ 1.22
USP1O94782 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
USP1O94782 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.65■■□□□ 1.22
USP1O94782 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.65■■□□□ 1.22
USP1O94782 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.65■■□□□ 1.22
USP1O94782 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP1O94782 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP1O94782 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP1O94782 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP1O94782 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
USP1O94782 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
USP1O94782 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
USP1O94782 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.64■■□□□ 1.22
USP1O94782 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.64■■□□□ 1.21
USP1O94782 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.64■■□□□ 1.21
USP1O94782 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
USP1O94782 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.64■■□□□ 1.21
USP1O94782 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
USP1O94782 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
USP1O94782 AL031848.2-201ENST00000607670 837 ntBASIC22.64■■□□□ 1.21
USP1O94782 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.64■■□□□ 1.21
USP1O94782 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.64■■□□□ 1.21
USP1O94782 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
USP1O94782 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
USP1O94782 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP1O94782 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.63■■□□□ 1.21
USP1O94782 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
USP1O94782 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.63■■□□□ 1.21
USP1O94782 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
USP1O94782 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.62■■□□□ 1.21
USP1O94782 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.62■■□□□ 1.21
USP1O94782 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.62■■□□□ 1.21
USP1O94782 C1orf229-201ENST00000623686 2258 ntBASIC22.62■■□□□ 1.21
USP1O94782 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms