Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.88■■□□□ 1.09
UBFD1O14562 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
UBFD1O14562 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.88■■□□□ 1.09
UBFD1O14562 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.88■■□□□ 1.09
UBFD1O14562 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UBFD1O14562 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.87■■□□□ 1.09
UBFD1O14562 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UBFD1O14562 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UBFD1O14562 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
UBFD1O14562 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.87■■□□□ 1.09
UBFD1O14562 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.87■■□□□ 1.09
UBFD1O14562 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.87■■□□□ 1.09
UBFD1O14562 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.87■■□□□ 1.09
UBFD1O14562 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
UBFD1O14562 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.87■■□□□ 1.09
UBFD1O14562 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.87■■□□□ 1.09
UBFD1O14562 LINC00565-201ENST00000562710 2331 ntBASIC21.86■■□□□ 1.09
UBFD1O14562 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.86■■□□□ 1.09
UBFD1O14562 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.86■■□□□ 1.09
UBFD1O14562 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
UBFD1O14562 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
UBFD1O14562 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
UBFD1O14562 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
UBFD1O14562 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.85■■□□□ 1.09
UBFD1O14562 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.85■■□□□ 1.09
UBFD1O14562 AC103834.1-201ENST00000520383 144 ntBASIC21.85■■□□□ 1.09
UBFD1O14562 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.85■■□□□ 1.09
UBFD1O14562 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
UBFD1O14562 CLDN5-201ENST00000403084 2357 ntBASIC21.85■■□□□ 1.09
UBFD1O14562 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.85■■□□□ 1.09
UBFD1O14562 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
UBFD1O14562 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
UBFD1O14562 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.84■■□□□ 1.09
UBFD1O14562 LINC00526-201ENST00000581067 1875 ntBASIC21.84■■□□□ 1.09
UBFD1O14562 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
UBFD1O14562 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
UBFD1O14562 MIR4508-201ENST00000584178 70 ntBASIC21.84■■□□□ 1.09
UBFD1O14562 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBFD1O14562 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.84■■□□□ 1.09
UBFD1O14562 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
UBFD1O14562 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
UBFD1O14562 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
UBFD1O14562 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBFD1O14562 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UBFD1O14562 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.83■■□□□ 1.09
UBFD1O14562 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.83■■□□□ 1.09
UBFD1O14562 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
UBFD1O14562 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.83■■□□□ 1.09
UBFD1O14562 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.83■■□□□ 1.09
UBFD1O14562 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.83■■□□□ 1.09
UBFD1O14562 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
UBFD1O14562 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
UBFD1O14562 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
UBFD1O14562 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
UBFD1O14562 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
UBFD1O14562 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
UBFD1O14562 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.82■■□□□ 1.08
UBFD1O14562 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
UBFD1O14562 AL353803.4-201ENST00000565882 1934 ntBASIC21.82■■□□□ 1.08
UBFD1O14562 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UBFD1O14562 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UBFD1O14562 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UBFD1O14562 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UBFD1O14562 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.82■■□□□ 1.08
UBFD1O14562 ECEL1P1-201ENST00000373592 1742 ntBASIC21.82■■□□□ 1.08
UBFD1O14562 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
UBFD1O14562 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
UBFD1O14562 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
UBFD1O14562 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.81■■□□□ 1.08
UBFD1O14562 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
UBFD1O14562 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.81■■□□□ 1.08
UBFD1O14562 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 AL033527.3-201ENST00000566366 1196 ntBASIC21.81■■□□□ 1.08
UBFD1O14562 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
UBFD1O14562 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.81■■□□□ 1.08
UBFD1O14562 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
UBFD1O14562 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms