Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.06■□□□□ 0.64
SDCBPO00560 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SDCBPO00560 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.05■□□□□ 0.64
SDCBPO00560 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SDCBPO00560 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.05■□□□□ 0.64
SDCBPO00560 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.05■□□□□ 0.64
SDCBPO00560 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDCBPO00560 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.05■□□□□ 0.64
SDCBPO00560 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.04■□□□□ 0.64
SDCBPO00560 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.04■□□□□ 0.64
SDCBPO00560 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SDCBPO00560 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 AL033527.3-201ENST00000566366 1196 ntBASIC19.04■□□□□ 0.64
SDCBPO00560 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.04■□□□□ 0.64
SDCBPO00560 AC010980.1-201ENST00000587192 1142 ntBASIC19.04■□□□□ 0.64
SDCBPO00560 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SDCBPO00560 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.04■□□□□ 0.64
SDCBPO00560 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.04■□□□□ 0.64
SDCBPO00560 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.03■□□□□ 0.64
SDCBPO00560 LINC00526-201ENST00000581067 1875 ntBASIC19.03■□□□□ 0.64
SDCBPO00560 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.03■□□□□ 0.64
SDCBPO00560 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.03■□□□□ 0.64
SDCBPO00560 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.03■□□□□ 0.64
SDCBPO00560 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SDCBPO00560 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDCBPO00560 AL161729.1-201ENST00000604104 1402 ntBASIC19.02■□□□□ 0.64
SDCBPO00560 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SDCBPO00560 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.02■□□□□ 0.64
SDCBPO00560 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SDCBPO00560 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SDCBPO00560 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.02■□□□□ 0.64
SDCBPO00560 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SDCBPO00560 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SDCBPO00560 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
SDCBPO00560 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
SDCBPO00560 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SDCBPO00560 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.02■□□□□ 0.63
SDCBPO00560 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SDCBPO00560 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.01■□□□□ 0.63
SDCBPO00560 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SDCBPO00560 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.01■□□□□ 0.63
SDCBPO00560 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.01■□□□□ 0.63
SDCBPO00560 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SDCBPO00560 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.01■□□□□ 0.63
SDCBPO00560 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SDCBPO00560 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SDCBPO00560 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19■□□□□ 0.63
SDCBPO00560 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SDCBPO00560 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19■□□□□ 0.63
SDCBPO00560 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19■□□□□ 0.63
SDCBPO00560 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19■□□□□ 0.63
SDCBPO00560 PVT1_1.1-201ENST00000615125 194 ntBASIC19■□□□□ 0.63
SDCBPO00560 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
SDCBPO00560 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SDCBPO00560 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19■□□□□ 0.63
SDCBPO00560 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
SDCBPO00560 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SDCBPO00560 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SDCBPO00560 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SDCBPO00560 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDCBPO00560 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.99■□□□□ 0.63
SDCBPO00560 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.99■□□□□ 0.63
SDCBPO00560 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDCBPO00560 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.99■□□□□ 0.63
SDCBPO00560 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.99■□□□□ 0.63
SDCBPO00560 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.99■□□□□ 0.63
SDCBPO00560 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms