Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.36■■□□□ 1.01
UPK1AO00322 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
UPK1AO00322 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.35■■□□□ 1.01
UPK1AO00322 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK1AO00322 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
UPK1AO00322 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
UPK1AO00322 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
UPK1AO00322 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK1AO00322 AC004448.1-201ENST00000458332 883 ntBASIC21.35■■□□□ 1.01
UPK1AO00322 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.35■■□□□ 1.01
UPK1AO00322 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK1AO00322 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UPK1AO00322 LINC00526-201ENST00000581067 1875 ntBASIC21.35■■□□□ 1.01
UPK1AO00322 ALDH1A3-203ENST00000557963 1670 ntBASIC21.34■■□□□ 1.01
UPK1AO00322 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
UPK1AO00322 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
UPK1AO00322 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
UPK1AO00322 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK1AO00322 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK1AO00322 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.34■■□□□ 1.01
UPK1AO00322 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK1AO00322 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK1AO00322 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1.01
UPK1AO00322 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPK1AO00322 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK1AO00322 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPK1AO00322 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1.01
UPK1AO00322 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK1AO00322 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
UPK1AO00322 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
UPK1AO00322 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
UPK1AO00322 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.32■■□□□ 1
UPK1AO00322 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.32■■□□□ 1
UPK1AO00322 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.32■■□□□ 1
UPK1AO00322 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.32■■□□□ 1
UPK1AO00322 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
UPK1AO00322 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
UPK1AO00322 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
UPK1AO00322 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
UPK1AO00322 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
UPK1AO00322 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.31■■□□□ 1
UPK1AO00322 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.31■■□□□ 1
UPK1AO00322 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
UPK1AO00322 AC021242.3-201ENST00000607598 1377 ntBASIC21.31■■□□□ 1
UPK1AO00322 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK1AO00322 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UPK1AO00322 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.3■■□□□ 1
UPK1AO00322 GUSBP5-202ENST00000510805 1989 ntBASIC21.3■■□□□ 1
UPK1AO00322 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UPK1AO00322 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.3■■□□□ 1
UPK1AO00322 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.3■■□□□ 1
UPK1AO00322 SNX5-217ENST00000606557 1087 ntBASIC21.3■■□□□ 1
UPK1AO00322 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
UPK1AO00322 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.3■■□□□ 1
UPK1AO00322 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
UPK1AO00322 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.29■■□□□ 1
UPK1AO00322 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.29■■□□□ 1
UPK1AO00322 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
UPK1AO00322 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.29■■□□□ 1
UPK1AO00322 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 BX664725.1-201ENST00000438252 379 ntBASIC21.29■■□□□ 1
UPK1AO00322 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.29■■□□□ 1
UPK1AO00322 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.29■■□□□ 1
UPK1AO00322 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.29■■□□□ 1
UPK1AO00322 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
UPK1AO00322 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.29■■□□□ 1
UPK1AO00322 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
UPK1AO00322 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK1AO00322 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
UPK1AO00322 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
UPK1AO00322 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK1AO00322 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.28■■□□□ 1
UPK1AO00322 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms