Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 AC133637.1-201ENST00000624115 1537 ntBASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 AC135731.1-201ENST00000569415 2548 ntBASIC20.47■□□□□ 0.87
TRAV17A0A0B4J275 FP325331.1-202ENST00000623531 1380 ntBASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV17A0A0B4J275 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 AL499627.2-201ENST00000606283 725 ntBASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV17A0A0B4J275 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
TRAV17A0A0B4J275 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
TRAV17A0A0B4J275 IGHV3-19-201ENST00000521488 291 ntBASIC20.44■□□□□ 0.86
TRAV17A0A0B4J275 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.44■□□□□ 0.86
TRAV17A0A0B4J275 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV17A0A0B4J275 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV17A0A0B4J275 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 AC142381.3-201ENST00000568208 1670 ntBASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 AC034268.1-201ENST00000441047 882 ntBASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 AL358852.1-201ENST00000623174 1268 ntBASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV17A0A0B4J275 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 YBX1P1-201ENST00000445822 960 ntBASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 DUX4L4-201ENST00000566884 1269 ntBASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAV17A0A0B4J275 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRAV17A0A0B4J275 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 MIR572-201ENST00000384983 95 ntBASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TRAV17A0A0B4J275 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV17A0A0B4J275 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
TRAV17A0A0B4J275 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV17A0A0B4J275 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms