Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV1-1A0A0B4J248 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV1-1A0A0B4J248 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 KRT18P10-201ENST00000388836 1287 ntBASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 AC079630.1-202ENST00000618127 1840 ntBASIC17.6■□□□□ 0.41
TRAV1-1A0A0B4J248 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV1-1A0A0B4J248 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV1-1A0A0B4J248 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV1-1A0A0B4J248 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
TRAV1-1A0A0B4J248 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.58■□□□□ 0.41
TRAV1-1A0A0B4J248 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TRAV1-1A0A0B4J248 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 AC092667.1-201ENST00000434301 2586 ntBASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV1-1A0A0B4J248 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV1-1A0A0B4J248 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms