Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC9.91□□□□□ -0.82
UBE2D4Q9Y2X8 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
UBE2D4Q9Y2X8 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC9.91□□□□□ -0.82
UBE2D4Q9Y2X8 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
UBE2D4Q9Y2X8 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
UBE2D4Q9Y2X8 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AL358781.1-202ENST00000321081 1360 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ENTPD4-202ENST00000358689 5861 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 GHET1-201ENST00000627071 1906 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AC060814.4-201ENST00000594169 2163 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 USP39-220ENST00000613444 2161 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 APPBP2-201ENST00000083182 6478 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 EDF1-203ENST00000371649 790 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ACTG1P3-201ENST00000431775 1114 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 SERBP1P5-201ENST00000510079 1181 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 RNA5SP486-201ENST00000515961 83 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 RNA5SP421-201ENST00000516864 134 ntBASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ARL16-210ENST00000574938 751 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
UBE2D4Q9Y2X8 AC007952.5-201ENST00000572818 1486 ntBASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 CCT8L1P-201ENST00000465400 1674 ntBASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
UBE2D4Q9Y2X8 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC9.89□□□□□ -0.83
UBE2D4Q9Y2X8 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms