Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
RFC3P40938 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.04□□□□□ -0.32
RFC3P40938 MARK2P16-201ENST00000605714 1723 ntBASIC13.04□□□□□ -0.32
RFC3P40938 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.04□□□□□ -0.32
RFC3P40938 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
RFC3P40938 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
RFC3P40938 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
RFC3P40938 KRT8P31-201ENST00000504812 1408 ntBASIC13.04□□□□□ -0.32
RFC3P40938 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
RFC3P40938 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.03□□□□□ -0.32
RFC3P40938 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 SOD2-202ENST00000367054 815 ntTSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.03□□□□□ -0.32
RFC3P40938 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.03□□□□□ -0.32
RFC3P40938 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.03□□□□□ -0.32
RFC3P40938 AL627422.1-201ENST00000434104 580 ntBASIC13.03□□□□□ -0.32
RFC3P40938 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 AC098935.1-201ENST00000446057 611 ntBASIC13.03□□□□□ -0.32
RFC3P40938 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.03□□□□□ -0.32
RFC3P40938 AC005632.3-201ENST00000605544 308 ntBASIC13.03□□□□□ -0.32
RFC3P40938 AC087045.2-201ENST00000606279 1003 ntBASIC13.03□□□□□ -0.32
RFC3P40938 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
RFC3P40938 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC13.03□□□□□ -0.32
RFC3P40938 YRDCP1-201ENST00000621419 643 ntBASIC13.03□□□□□ -0.32
RFC3P40938 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 AC092978.1-202ENST00000637590 1327 ntBASIC13.03□□□□□ -0.32
RFC3P40938 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.03□□□□□ -0.32
RFC3P40938 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RFC3P40938 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
RFC3P40938 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.03□□□□□ -0.32
RFC3P40938 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
RFC3P40938 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 AC140479.7-201ENST00000636301 2332 ntBASIC13.02□□□□□ -0.32
RFC3P40938 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.32
RFC3P40938 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.02□□□□□ -0.32
RFC3P40938 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.02□□□□□ -0.32
RFC3P40938 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 AC073869.1-201ENST00000415574 2762 ntBASIC13.02□□□□□ -0.32
RFC3P40938 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RFC3P40938 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
RFC3P40938 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
RFC3P40938 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.02□□□□□ -0.33
RFC3P40938 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
RFC3P40938 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RFC3P40938 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RFC3P40938 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
RFC3P40938 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms